Wrapper for Hadoop-BAM to work around requirement for no-args constructor.
Wrapper for Hadoop-BAM to work around requirement for no-args constructor.
An RDD containing variant annotations against a given reference genome.
An RDD containing genotypes called in a set of samples against a given reference genome.
An RDD containing genotypes called in a set of samples against a given reference genome.
Called genotypes.
A dictionary describing the reference genome.
The samples called.
An RDD containing VariantContexts attached to a reference and samples.
An RDD containing VariantContexts attached to a reference and samples.
The underlying RDD of VariantContexts.
The genome sequence these variants were called against.
The genotyped samples in this RDD of VariantContexts.
An RDD containing variants called against a given reference genome.
An RDD containing variants called against a given reference genome.
Variants.
A dictionary describing the reference genome.
An RDD containing variant annotations against a given reference genome.
Variant annotations.
A dictionary describing the reference genome.