org
.
bdgenomics
.
adam
.
models
SequenceRecord
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class SequenceRecord
|
package models
object
SequenceRecord
extends
Serializable
Linear Supertypes
Serializable
,
Serializable
,
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SequenceRecord
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final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
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final
def
##
()
:
Int
Definition Classes
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final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
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val
GENBANK_TAG
:
String
val
REFSEQ_TAG
:
String
def
apply
(
name:
String
,
length:
Long
,
md5:
String
=
null
,
url:
String
=
null
,
refseq:
String
=
null
,
genbank:
String
=
null
,
assembly:
String
=
null
,
species:
String
=
null
,
referenceIndex:
Option
[
Int
] =
None
)
:
SequenceRecord
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
...
)
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
def
fromADAMContig
(
contig:
Contig
)
:
SequenceRecord
def
fromADAMContigFragment
(
fragment:
NucleotideContigFragment
)
:
SequenceRecord
def
fromSAMSequenceRecord
(
record:
SAMSequenceRecord
)
:
SequenceRecord
def
fromSpecificRecord
(
rec:
IndexedRecord
)
:
SequenceRecord
final
def
getClass
()
:
Class
[_]
Definition Classes
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def
hashCode
()
:
Int
Definition Classes
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final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
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final
def
notify
()
:
Unit
Definition Classes
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final
def
notifyAll
()
:
Unit
Definition Classes
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final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
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def
toADAMContig
(
record:
SequenceRecord
)
:
Contig
def
toSAMSequenceRecord
(
record:
SequenceRecord
)
:
SAMSequenceRecord
def
toString
()
:
String
Definition Classes
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final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
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Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
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Annotations
@throws
(
...
)
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Serializable
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