Object

org.bdgenomics.adam.projections

AlignmentRecordField

Related Doc: package projections

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object AlignmentRecordField extends FieldEnumeration

Enumeration of AlignmentRecord field names for predicates and projections.

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FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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  1. AlignmentRecordField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
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Type Members

  1. class SchemaVal extends Val with FieldValue

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    Definition Classes
    FieldEnumeration
  2. class Val extends Value with Serializable

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    Annotations
    @SerialVersionUID()
  3. abstract class Value extends Ordered[Value] with Serializable

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    @SerialVersionUID()
  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

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    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def SchemaValue: SchemaVal

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    Attributes
    protected
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    FieldEnumeration
  5. final def Value(i: Int, name: String): Value

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    Enumeration
  6. final def Value(name: String): Value

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    Enumeration
  7. final def Value(i: Int): Value

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  8. final def Value: Value

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    Enumeration
  9. final def apply(x: Int): Value

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    Enumeration
  10. final def asInstanceOf[T0]: T0

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    Any
  11. val attributes: SchemaVal

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  12. val cigar: SchemaVal

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  13. def clone(): AnyRef

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    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  14. val contigName: SchemaVal

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  15. val duplicateRead: SchemaVal

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  16. val end: SchemaVal

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  17. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  18. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  19. val failedVendorQualityChecks: SchemaVal

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  20. def finalize(): Unit

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    protected[java.lang]
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    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  21. final def getClass(): Class[_]

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  22. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  23. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  24. val mapq: SchemaVal

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  25. val mateAlignmentStart: SchemaVal

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  26. val mateContigName: SchemaVal

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  27. val mateMapped: SchemaVal

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  28. val mateNegativeStrand: SchemaVal

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  29. final def maxId: Int

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    Definition Classes
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  30. val mismatchingPositions: SchemaVal

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  31. final def ne(arg0: AnyRef): Boolean

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    AnyRef
  32. var nextId: Int

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  33. var nextName: Iterator[String]

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    Enumeration
  34. final def notify(): Unit

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    Definition Classes
    AnyRef
  35. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  36. val origQual: SchemaVal

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  37. val primaryAlignment: SchemaVal

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  38. val properPair: SchemaVal

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  39. val qual: SchemaVal

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  40. val readInFragment: SchemaVal

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  41. val readMapped: SchemaVal

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  42. val readName: SchemaVal

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  43. val readNegativeStrand: SchemaVal

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  44. val readPaired: SchemaVal

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  45. def readResolve(): AnyRef

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    Attributes
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    Enumeration
  46. val recordGroupDescription: SchemaVal

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  47. val recordGroupFlowOrder: SchemaVal

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  48. val recordGroupId: SchemaVal

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  49. val recordGroupKeySequence: SchemaVal

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  50. val recordGroupLibrary: SchemaVal

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  51. val recordGroupName: SchemaVal

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  52. val recordGroupPlatform: SchemaVal

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  53. val recordGroupPlatformUnit: SchemaVal

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  54. val recordGroupPredictedMedianInsertSize: SchemaVal

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  55. val recordGroupRunDateEpoch: SchemaVal

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  56. val recordGroupSample: SchemaVal

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  57. val recordGroupSequencingCenter: SchemaVal

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  58. val recordSchema: Schema

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    Definition Classes
    FieldEnumeration
  59. val secondaryAlignment: SchemaVal

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  60. val sequence: SchemaVal

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  61. val start: SchemaVal

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  62. val supplementaryAlignment: SchemaVal

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  63. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  64. def toString(): String

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    Definition Classes
    Enumeration → AnyRef → Any
  65. def values: ValueSet

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    Definition Classes
    Enumeration
  66. final def wait(): Unit

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    Definition Classes
    AnyRef
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    @throws( ... )
  67. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )
  68. final def wait(arg0: Long): Unit

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    Definition Classes
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    @throws( ... )
  69. final def withName(s: String): Value

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    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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