Class/Object

org.bdgenomics.adam.rich

RichCigar

Related Docs: object RichCigar | package rich

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class RichCigar extends AnyRef

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Instance Constructors

  1. new RichCigar(cigar: Cigar)

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. final def eq(arg0: AnyRef): Boolean

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  7. def equals(arg0: Any): Boolean

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  8. def finalize(): Unit

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  9. final def getClass(): Class[_]

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  10. def getLength(): Int

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  11. def hashCode(): Int

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  12. final def isInstanceOf[T0]: Boolean

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  13. def isWellFormed(readLength: Int): Boolean

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    Checks to see if Cigar is well formed.

    Checks to see if Cigar is well formed. We assume that it is well formed if the cigar lenmgth matches the read length.

    readLength

    Length of the read sequence.

  14. def moveLeft(index: Int): Cigar

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    Moves a single element in the cigar left by one position.

    Moves a single element in the cigar left by one position.

    index

    Index of the element to move.

    returns

    New cigar with this element moved left.

  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. lazy val numAlignmentBlocks: Int

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  19. lazy val numElements: Int

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  20. final def synchronized[T0](arg0: ⇒ T0): T0

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  21. def toString(): String

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  22. final def wait(): Unit

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  23. final def wait(arg0: Long, arg1: Int): Unit

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  24. final def wait(arg0: Long): Unit

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