Class/Object

org.bdgenomics.adam.rdd.read

FlagStatMetrics

Related Docs: object FlagStatMetrics | package read

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case class FlagStatMetrics(total: Long, duplicatesPrimary: DuplicateMetrics, duplicatesSecondary: DuplicateMetrics, mapped: Long, pairedInSequencing: Long, read1: Long, read2: Long, properlyPaired: Long, withSelfAndMateMapped: Long, singleton: Long, withMateMappedToDiffChromosome: Long, withMateMappedToDiffChromosomeMapQ5: Long, failedQuality: Boolean) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. FlagStatMetrics
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
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  7. Any
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Visibility
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Instance Constructors

  1. new FlagStatMetrics(total: Long, duplicatesPrimary: DuplicateMetrics, duplicatesSecondary: DuplicateMetrics, mapped: Long, pairedInSequencing: Long, read1: Long, read2: Long, properlyPaired: Long, withSelfAndMateMapped: Long, singleton: Long, withMateMappedToDiffChromosome: Long, withMateMappedToDiffChromosomeMapQ5: Long, failedQuality: Boolean)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. def +(that: FlagStatMetrics): FlagStatMetrics

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  4. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  7. val duplicatesPrimary: DuplicateMetrics

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  8. val duplicatesSecondary: DuplicateMetrics

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  9. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  10. val failedQuality: Boolean

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  11. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  13. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  14. val mapped: Long

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  15. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  16. final def notify(): Unit

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    Definition Classes
    AnyRef
  17. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  18. val pairedInSequencing: Long

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  19. val properlyPaired: Long

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  20. val read1: Long

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  21. val read2: Long

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  22. val singleton: Long

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  23. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  24. val total: Long

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  25. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  28. val withMateMappedToDiffChromosome: Long

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  29. val withMateMappedToDiffChromosomeMapQ5: Long

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  30. val withSelfAndMateMapped: Long

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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