Trait

org.bdgenomics.adam.rdd

RegionJoin

Related Doc: package rdd

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trait RegionJoin[T, U, RT, RU] extends AnyRef

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Abstract Value Members

  1. abstract def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)])(implicit tManifest: ClassTag[T], uManifest: ClassTag[U]): RDD[(RT, RU)]

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    Performs a region join between two RDDs.

    Performs a region join between two RDDs.

    baseRDD

    The 'left' side of the join

    joinedRDD

    The 'right' side of the join

    tManifest

    implicit type of baseRDD

    uManifest

    implicit type of joinedRDD

    returns

    An RDD of pairs (x, y), where x is from baseRDD, y is from joinedRDD, and the region corresponding to x overlaps the region corresponding to y.

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  7. def equals(arg0: Any): Boolean

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  8. def finalize(): Unit

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  9. final def getClass(): Class[_]

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  10. def hashCode(): Int

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  11. final def isInstanceOf[T0]: Boolean

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  12. final def ne(arg0: AnyRef): Boolean

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  13. final def notify(): Unit

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  14. final def notifyAll(): Unit

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  15. final def synchronized[T0](arg0: ⇒ T0): T0

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  16. def toString(): String

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  17. final def wait(): Unit

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  18. final def wait(arg0: Long, arg1: Int): Unit

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  19. final def wait(arg0: Long): Unit

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