Class

org.bdgenomics.adam.rich

ReferenceSequenceContext

Related Doc: package rich

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case class ReferenceSequenceContext(pos: Option[ReferencePosition], referenceBase: Option[Char], cigarElement: CigarElement, cigarElementOffset: Int) extends Product with Serializable

Represents information on the reference relative to a particular residue

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. ReferenceSequenceContext
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new ReferenceSequenceContext(pos: Option[ReferencePosition], referenceBase: Option[Char], cigarElement: CigarElement, cigarElementOffset: Int)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  5. val cigarElement: CigarElement

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  6. val cigarElementOffset: Int

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  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  11. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  12. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  13. final def notify(): Unit

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    Definition Classes
    AnyRef
  14. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  15. val pos: Option[ReferencePosition]

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  16. val referenceBase: Option[Char]

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  17. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  18. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
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    Annotations
    @throws( ... )
  20. final def wait(arg0: Long): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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