Object

org.bdgenomics.adam.projections

VariantCallingAnnotationsField

Related Doc: package projections

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object VariantCallingAnnotationsField extends FieldEnumeration

Enumeration of VariantCallingAnnotations field names for predicates and projections.

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FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Inherited
  1. VariantCallingAnnotationsField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

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    Definition Classes
    FieldEnumeration
  2. class Val extends Value with Serializable

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    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()
  3. abstract class Value extends Ordered[Value] with Serializable

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    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()
  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

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    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def SchemaValue: SchemaVal

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    Attributes
    protected
    Definition Classes
    FieldEnumeration
  5. final def Value(i: Int, name: String): Value

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    Attributes
    protected
    Definition Classes
    Enumeration
  6. final def Value(name: String): Value

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    Attributes
    protected
    Definition Classes
    Enumeration
  7. final def Value(i: Int): Value

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    Attributes
    protected
    Definition Classes
    Enumeration
  8. final def Value: Value

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    Attributes
    protected
    Definition Classes
    Enumeration
  9. val alleleCountMLE: SchemaVal

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  10. val alleleFrequencyMLE: SchemaVal

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  11. final def apply(x: Int): Value

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    Definition Classes
    Enumeration
  12. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  13. val baseQRankSum: SchemaVal

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  14. val clippingRankSum: SchemaVal

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  15. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  16. val culprit: SchemaVal

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  17. val downsampled: SchemaVal

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  18. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  19. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  20. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  21. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  22. val haplotypeScore: SchemaVal

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  23. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  24. val inbreedingCoefficient: SchemaVal

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  25. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  26. val mapq0Reads: SchemaVal

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  27. final def maxId: Int

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    Definition Classes
    Enumeration
  28. val mqRankSum: SchemaVal

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  29. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  30. var nextId: Int

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    Attributes
    protected
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    Enumeration
  31. var nextName: Iterator[String]

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    Attributes
    protected
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    Enumeration
  32. final def notify(): Unit

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    Definition Classes
    AnyRef
  33. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  34. val readDepth: SchemaVal

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  35. val readPositionRankSum: SchemaVal

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  36. def readResolve(): AnyRef

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    Attributes
    protected
    Definition Classes
    Enumeration
  37. val recordSchema: Schema

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    Definition Classes
    FieldEnumeration
  38. val rmsMapQ: SchemaVal

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  39. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  40. def toString(): String

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    Definition Classes
    Enumeration → AnyRef → Any
  41. val usedForNegativeTrainingSet: SchemaVal

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  42. val usedForPositiveTrainingSet: SchemaVal

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  43. def values: ValueSet

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    Definition Classes
    Enumeration
  44. val variantCallErrorProbability: SchemaVal

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  45. val variantFilters: SchemaVal

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  46. val variantIsPassing: SchemaVal

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  47. val variantQualityByDepth: SchemaVal

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  48. val vqslod: SchemaVal

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  49. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  50. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  51. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  52. final def withName(s: String): Value

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    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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