Class/Object

org.bdgenomics.adam.models

RecordGroup

Related Docs: object RecordGroup | package models

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case class RecordGroup(sample: String, recordGroupName: String, sequencingCenter: Option[String] = None, description: Option[String] = None, runDateEpoch: Option[Long] = None, flowOrder: Option[String] = None, keySequence: Option[String] = None, library: Option[String] = None, predictedMedianInsertSize: Option[Int] = None, platform: Option[String] = None, platformUnit: Option[String] = None) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. RecordGroup
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
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Instance Constructors

  1. new RecordGroup(sample: String, recordGroupName: String, sequencingCenter: Option[String] = None, description: Option[String] = None, runDateEpoch: Option[Long] = None, flowOrder: Option[String] = None, keySequence: Option[String] = None, library: Option[String] = None, predictedMedianInsertSize: Option[Int] = None, platform: Option[String] = None, platformUnit: Option[String] = None)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. val description: Option[String]

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  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  8. def equals(o: Any): Boolean

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    Compares equality to another object.

    Compares equality to another object. Only checks equality via the sample and recordGroupName fields.

    o

    Object to compare against.

    returns

    Returns true if the object is a RecordGroup, and the sample and group name are equal. Else, returns false.

    Definition Classes
    RecordGroup → Equals → AnyRef → Any
  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. val flowOrder: Option[String]

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  11. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  12. def hashCode(): Int

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    Generates a hash from the sample and record group name fields.

    Generates a hash from the sample and record group name fields.

    returns

    Hash code for this object.

    Definition Classes
    RecordGroup → AnyRef → Any
  13. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  14. val keySequence: Option[String]

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  15. val library: Option[String]

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  16. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  17. final def notify(): Unit

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    Definition Classes
    AnyRef
  18. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  19. val platform: Option[String]

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  20. val platformUnit: Option[String]

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  21. val predictedMedianInsertSize: Option[Int]

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  22. val recordGroupName: String

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  23. val runDateEpoch: Option[Long]

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  24. val sample: String

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  25. val sequencingCenter: Option[String]

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  26. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  27. def toMetadata: RecordGroupMetadata

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    Converts this into an Avro RecordGroupMetadata description for serialization to disk.

    Converts this into an Avro RecordGroupMetadata description for serialization to disk.

    returns

    Returns Avro version of RecordGroup.

  28. def toSAMReadGroupRecord(): SAMReadGroupRecord

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    Converts a record group into a SAM formatted record group.

    Converts a record group into a SAM formatted record group.

    returns

    A SAM formatted record group.

  29. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  30. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  31. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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