Class/Object

org.bdgenomics.adam.rdd.read.recalibration

Aggregate

Related Docs: object Aggregate | package recalibration

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class Aggregate extends Observation

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Observation, Serializable, Serializable, AnyRef, Any
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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. def +(that: Aggregate): Aggregate

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  4. def +(that: Observation): Observation

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  5. final def ==(arg0: Any): Boolean

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  6. final def asInstanceOf[T0]: T0

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  7. def bayesianErrorProbability(a: Double, b: Double): Double

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    Observation
  8. def bayesianErrorProbability: Double

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    Estimates the probability of a mismatch under a Bayesian model with Binomial likelihood and Beta(a, b) prior.

    Estimates the probability of a mismatch under a Bayesian model with Binomial likelihood and Beta(a, b) prior. When a = b = 1, this is also known as "Laplace's rule of succession".

    TODO: Beta(1, 1) is the safest choice, but maybe Beta(1/2, 1/2) is more accurate?

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  9. def clone(): AnyRef

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  10. def empiricalErrorProbability: Double

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    Empirically estimated probability of a mismatch.

    Empirically estimated probability of a mismatch.

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    Observation
  11. def empiricalQuality: QualityScore

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    Empirically estimated probability of a mismatch, as a QualityScore.

    Empirically estimated probability of a mismatch, as a QualityScore.

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    Observation
  12. final def eq(arg0: AnyRef): Boolean

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  13. def equals(other: Any): Boolean

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  14. val expectedMismatches: Double

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  15. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  16. final def getClass(): Class[_]

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  17. def hashCode(): Int

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  18. final def isInstanceOf[T0]: Boolean

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  19. val mismatches: Long

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  20. final def ne(arg0: AnyRef): Boolean

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  21. final def notify(): Unit

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  22. final def notifyAll(): Unit

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  23. def reportedErrorProbability: Double

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  24. final def synchronized[T0](arg0: ⇒ T0): T0

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  25. def toCSV: Seq[String]

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  26. def toString(): String

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  27. val total: Long

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  28. final def wait(): Unit

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  29. final def wait(arg0: Long, arg1: Int): Unit

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  30. final def wait(arg0: Long): Unit

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Inherited from Observation

Inherited from Serializable

Inherited from Serializable

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