Serialized Form

Package org.anchoranalysis.spatial.axis

Class org.anchoranalysis.spatial.axis.AxisConversionException extends AnchorFriendlyCheckedException implements Serializable

serialVersionUID:

1L

Package org.anchoranalysis.spatial.box

Class org.anchoranalysis.spatial.box.BoundingBox extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

cornerMaxExclusive

Point3i cornerMaxExclusive

The top-right corner of the bounding box (exclusive).

This is cornerMaxInclusive with 1 added in each dimension.

It is calculated lazily when first needed by BoundingBox.calculateCornerMaxExclusive().

cornerMaxInclusive

Point3i cornerMaxInclusive

The top-right corner of the bounding box (inclusive).

This the maximum valid point in all dimensions for the bounding-box.

It is calculated lazily when first needed by BoundingBox.calculateCornerMaxInclusive().

cornerMin

Point3i cornerMin

The bottom-left corner of the bounding box.

This the minimum point in all dimensions for the bounding-box.

extent

Extent extent

Dimensions in pixels needed to represent the bounding box.

This emanates in a positive direction from cornerMin to define the complete box.

Class org.anchoranalysis.spatial.box.Extent extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

areaXY

int areaXY

Size in X multiplied by size in Y.

This may be convenient for calculating offsets and for iterations.

Note if the area is too large to be stored as an int, a -1 is stored instead. This should be checked for, with an appropriate error message, or alternative behavior occurring in these instances.

We avoid storing the area as a long, as it would create computational overhead in the vast bulk of cases where an int is sufficient, especially for operations like calculating offsets that may occur repeatedly in a loop. It is preferable to handle the outlier cases of very large areas separately.

size

ReadableTuple3i size

Sizes in each dimension.

Package org.anchoranalysis.spatial.orientation

Class org.anchoranalysis.spatial.orientation.Orientation extends Object implements Serializable

serialVersionUID:

1L

Class org.anchoranalysis.spatial.orientation.Orientation2D extends Orientation implements Serializable

serialVersionUID:

1528190376087281572L

Serialized Fields

angleRadians

double angleRadians

The angle of the rotation in the 2D plane anti-clockwise, in radians.

Class org.anchoranalysis.spatial.orientation.Orientation3DEulerAngles extends Orientation implements Serializable

serialVersionUID:

1L

Serialized Fields

rotationX

double rotationX

Rotation around X-dimension (in radians) anti-clockwise.

This is the alpha parameter.

rotationY

double rotationY

Rotation around Y-dimension (in radians) anti-clockwise.

This is the beta parameter.

rotationZ

double rotationZ

Rotation around Z-dimension (in radians) anti-clockwise.

This is the gamma parameter.

Class org.anchoranalysis.spatial.orientation.OrientationAxisAngle extends Orientation implements Serializable

serialVersionUID:

-2592680414423106545L

Serialized Fields

angle

double angle

Angle part of axis-angle orientation (anti-clock in radians).

axis

Vector3d axis

Axis part of axis-angle orientation (should be normalized). Once this is passed here, it is consumed, and must not be changed elsewhere.

Class org.anchoranalysis.spatial.orientation.OrientationRotationMatrix extends Orientation implements Serializable

serialVersionUID:

-496736778234811706L

Serialized Fields

rotationMatrix

RotationMatrix rotationMatrix

The rotation-matrix. Once used here, it must be treated as immutable, and its state may not be changed elsewhere.

Class org.anchoranalysis.spatial.orientation.RotationMatrix extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

delegate

cern.colt.matrix.DoubleMatrix2D delegate

The underlying matrix implementing the rotation.

This name is deliberately kept as delegate to avoid breaking serialized objects.

singlePoint

cern.colt.matrix.DoubleMatrix2D singlePoint

Used temporarily to store the value of a single-point, to avoid unnecessary heap allocation.

Package org.anchoranalysis.spatial.point

Class org.anchoranalysis.spatial.point.Point2d extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

x

double x

X-axis component of point.

y

double y

Y-axis component of point.

Class org.anchoranalysis.spatial.point.Point2f extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

x

float x

X-axis component of point.

y

float y

Y-axis component of point.

Class org.anchoranalysis.spatial.point.Point2i extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

x

int x

X-axis component of point.

y

int y

Y-axis component of point.

Class org.anchoranalysis.spatial.point.Point3d extends Tuple3d implements Serializable

serialVersionUID:

1L

Class org.anchoranalysis.spatial.point.Point3f extends Tuple3f implements Serializable

serialVersionUID:

1L

Class org.anchoranalysis.spatial.point.Point3i extends Tuple3i implements Serializable

serialVersionUID:

1L

Class org.anchoranalysis.spatial.point.Tuple3d extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

x

double x

X-axis component of the tuple.

y

double y

Y-axis component of the tuple.

z

double z

Z-axis component of the tuple.

Class org.anchoranalysis.spatial.point.Tuple3f extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

x

float x

X-axis component of the tuple.

y

float y

Y-axis component of the tuple.

z

float z

Z-axis component of the tuple.

Class org.anchoranalysis.spatial.point.Tuple3i extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

x

int x

X-axis component of the tuple.

y

int y

Y-axis component of the tuple.

z

int z

Z-axis component of the tuple.

Class org.anchoranalysis.spatial.point.Vector3d extends Tuple3d implements Serializable

serialVersionUID:

1L