Serialized Form

Package org.anchoranalysis.mpp.bean.bound

Class Bound

class Bound extends MarkBounds implements Serializable

serialVersionUID:

-5447041367811327604L

Class BoundDegrees

class BoundDegrees extends BoundMinMax implements Serializable

serialVersionUID:

1281361242890359356L

Class BoundMinMax

class BoundMinMax extends Bound implements Serializable

serialVersionUID:

-493791653577617743L

Serialized Fields

delegate

ResolvedBound delegate

Class BoundPhysicalExtent

class BoundPhysicalExtent extends BoundMinMax implements Serializable

serialVersionUID:

-5440824428055546445L

Class BoundUnitless

class BoundUnitless extends BoundMinMax implements Serializable

serialVersionUID:

8738881592311859713L

Class MarkBounds

class MarkBounds extends AnchorBean<MarkBounds> implements Serializable

serialVersionUID:

0L

Class ResolvedBound

class ResolvedBound extends AnchorBean<ResolvedBound> implements Serializable

serialVersionUID:

1L

Serialized Fields

max

double max

min

double min

Package org.anchoranalysis.mpp.bean.points.fitter

Exception Class InsufficientPointsException

class InsufficientPointsException extends AnchorCheckedException implements Serializable

serialVersionUID:

1L

Exception Class PointsFitterException

class PointsFitterException extends AnchorCheckedException implements Serializable

serialVersionUID:

6066348459108781534L

Package org.anchoranalysis.mpp.mark

Class Mark

class Mark extends Object implements Serializable

serialVersionUID:

3272456193681334471L

Serialized Fields

id

int id

Class MarkCollection

class MarkCollection extends Object implements Serializable

serialVersionUID:

2398855316191681489L

Serialized Fields

marks

List<Mark> marks

The underlying List that stores the Marks in the collection.

Class MarkWithPosition

class MarkWithPosition extends Mark implements Serializable

serialVersionUID:

-6976277985708631268L

Serialized Fields

position

Point3d position

The position of the mark in 3D space.

Exception Class UnsupportedMarkTypeException

class UnsupportedMarkTypeException extends AnchorCheckedException implements Serializable

serialVersionUID:

-5855318973518035098L

Exception Class UpdateMarkSetException

class UpdateMarkSetException extends AnchorCheckedException implements Serializable

serialVersionUID:

-3084951824689469370L

Package org.anchoranalysis.mpp.mark.conic

Class Circle

class Circle extends MarkWithPositionAndSingleRadius implements Serializable

serialVersionUID:

8551900716243748046L

Class ConicBase

class ConicBase extends MarkWithPosition implements Serializable

serialVersionUID:

1680124471263339009L

Class Ellipse

class Ellipse extends ConicBase implements Serializable

serialVersionUID:

1L

Serialized Fields

ellipsoidCalculator

EllipsoidMatrixCalculator ellipsoidCalculator

orientation

Orientation orientation

radii

Point2d radii

radiiShellMaxSquared

double radiiShellMaxSquared

shell

double shell

The size of the shell, expressed as a ratio of the radius.

shellExternal

double shellExternal

shellExternalOut

double shellExternalOut

shellExternalOutSquared

double shellExternalOutSquared

shellExternalSquared

double shellExternalSquared

shellInternal

double shellInternal

shellInternalSquared

double shellInternalSquared

Class Ellipsoid

class Ellipsoid extends ConicBase implements Serializable

serialVersionUID:

-2678275834893266874L

Serialized Fields

ellipsoidCalculator

EllipsoidMatrixCalculator ellipsoidCalculator

Calculator for ellipsoid-related matrices.

innerCoreDistance

double innerCoreDistance

The distance to the inner core, expressed as a ratio of the radii.

orientation

Orientation orientation

The orientation of the ellipsoid.

radii

Point3d radii

The radii of the ellipsoid in 3D.

radiiShellMaxSq

double radiiShellMaxSq

shell

double shell

The size of the shell, expressed as a ratio of the radii.

shellExternal

double shellExternal

shellExternalOut

double shellExternalOut

shellExternalOutSquared

double shellExternalOutSquared

shellExternalSquared

double shellExternalSquared

shellInnerCore

double shellInnerCore

shellInnerCoreSquared

double shellInnerCoreSquared

shellInternal

double shellInternal

shellInternalSquared

double shellInternalSquared

Class MarkWithPositionAndSingleRadius

class MarkWithPositionAndSingleRadius extends MarkWithPosition implements Serializable

serialVersionUID:

1L

Serialized Fields

boundRadius

Bound boundRadius

radius

double radius

radiusExtraSq

double radiusExtraSq

radiusSq

double radiusSq

Class Sphere

class Sphere extends MarkWithPositionAndSingleRadius implements Serializable

serialVersionUID:

-3526056946146656810L

Package org.anchoranalysis.mpp.mark.points

Class LineSegment

class LineSegment extends Mark implements Serializable

serialVersionUID:

6436383113190855927L

Serialized Fields

distanceToLineForInside

double distanceToLineForInside

The maximum distance from the line for a point to be considered inside.

Class PointList

class PointList extends PointListBase implements Serializable

serialVersionUID:

1718294470056379145L

Serialized Fields

set

Set<Point3d> set

A set that makes it quick to check if a point is on the list.

Class PointListBase

class PointListBase extends Mark implements Serializable

serialVersionUID:

6520431317406007141L

Serialized Fields

max

Point3d max

The maximum x, y, z coordinates of all the points in the list.

min

Point3d min

The minimum x, y, z coordinates of all the points in the list.

points

List<Point3d> points

The list of 3D points that make up this mark.

Class Polygon

class Polygon extends PointListBase implements Serializable

serialVersionUID:

1718294470056379145L

Serialized Fields

area

double area

The area of the polygon

centroid

Point3d centroid

The centroid of the polygon

region

ij.gui.PolygonRoi region

A region of interest in ImageJ representing a polygon

Class PolygonCurve

class PolygonCurve extends PointListBase implements Serializable

serialVersionUID:

-2043844259526872933L

Class RotatableBoundingBox

class RotatableBoundingBox extends MarkWithPosition implements Serializable

serialVersionUID:

1L

Serialized Fields

distanceToLeftBottom

Point3d distanceToLeftBottom

Add to orientation to get the left-point and bottom-point (without rotation)

distanceToRightTop

Point3d distanceToRightTop

Add to orientation to get the right-point and top-point (without rotation)

orientation

Orientation orientation

An orientation in the 2D plane to rotate the bounding box by.

pointRelative

Point3d pointRelative

Repeatedly reused when evaluating points. We instantiate it here, to avoid unnecessary heap allocation.

rotMatrix

RotationMatrix rotMatrix

rotMatrixInv

RotationMatrix rotMatrixInv

Package org.anchoranalysis.mpp.proposer

Exception Class ProposalAbnormalFailureException

class ProposalAbnormalFailureException extends AnchorFriendlyCheckedException implements Serializable

serialVersionUID:

1L

Exception Class ProposerException

class ProposerException extends AnchorFriendlyCheckedException implements Serializable

serialVersionUID:

1L

Package org.anchoranalysis.mpp.proposer.error

Class ErrorNode

class ErrorNode extends Object implements Serializable

serialVersionUID:

-5769879460789165274L

Exception Class ErrorNodeException

class ErrorNodeException extends AnchorCheckedException implements Serializable

serialVersionUID:

-4000166470139114311L

Serialized Fields

str

String str

The error message associated with this exception.

Class ErrorNodeNull

class ErrorNodeNull extends ErrorNode implements Serializable

serialVersionUID:

5512508477564211253L