Uses of Class
org.anchoranalysis.mpp.mark.voxelized.memo.VoxelizedMarkMemo

Packages that use VoxelizedMarkMemo

Package	Description
org.anchoranalysis.mpp.bean.mark	Beans generally related to Marks.
org.anchoranalysis.mpp.bean.proposer	Proposing Marks or other data-structures with particular attributes.
org.anchoranalysis.mpp.mark	Non-bean classes related to Marks.
org.anchoranalysis.mpp.mark.voxelized.memo	Memoization of VoxelizedMarks.
org.anchoranalysis.mpp.overlap	Calculating overlaps between two Marks.
org.anchoranalysis.mpp.pair	Pairs of Marks.
org.anchoranalysis.mpp.proposer	Non-bean classes for proposing Marks or other data-structures with particular attributes.

Uses of VoxelizedMarkMemo in org.anchoranalysis.mpp.bean.mark

Methods in org.anchoranalysis.mpp.bean.mark with parameters of type VoxelizedMarkMemo

Modifier and Type	Method	Description
abstract VoxelStatistics	MarkRegion.createStatisticsFor(VoxelizedMarkMemo memo, Dimensions dimensions)	Creates voxel statistics for the mark region based on the given memo and dimensions.

Uses of VoxelizedMarkMemo in org.anchoranalysis.mpp.bean.proposer

Methods in org.anchoranalysis.mpp.bean.proposer with parameters of type VoxelizedMarkMemo

Modifier and Type	Method	Description
abstract Optional<Mark>	MarkMergeProposer.propose(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, ProposerContext context)	Proposes a merge between two marks.
abstract boolean	MarkProposer.propose(VoxelizedMarkMemo inputMark, ProposerContext context)	Proposes changes to the input mark according to the internal rules of the proposer.
abstract Optional<PairVoxelizedMarkMemo>	MarkSplitProposer.propose(VoxelizedMarkMemo mark, ProposerContext context, MarkWithIdentifierFactory markFactory)	Proposes a split of the input mark into two new marks.

Uses of VoxelizedMarkMemo in org.anchoranalysis.mpp.mark

Methods in org.anchoranalysis.mpp.mark with parameters of type VoxelizedMarkMemo

Modifier and Type	Method	Description
void	UpdatableMarks.add(MemoForIndex marksExisting, VoxelizedMarkMemo newMark)	Adds a new mark to the existing set of marks.
void	UpdatableMarks.exchange(MemoForIndex memo, VoxelizedMarkMemo oldMark, int indexOldMark, VoxelizedMarkMemo newMark)	Exchanges an existing mark with a new one.
void	UpdatableMarks.remove(MemoForIndex marksExisting, VoxelizedMarkMemo mark)	Removes a mark from the existing set of marks.

Uses of VoxelizedMarkMemo in org.anchoranalysis.mpp.mark.voxelized.memo

Methods in org.anchoranalysis.mpp.mark.voxelized.memo that return VoxelizedMarkMemo

Modifier and Type	Method	Description
static VoxelizedMarkMemo	VoxelizedMarkMemoFactory.create(Mark mark, EnergyStackWithoutParameters stack, RegionMap regionMap)	Creates a new VoxelizedMarkMemo instance.
VoxelizedMarkMemo	VoxelizedMarkMemo.duplicateFresh()	Duplicates the current mark memo, resetting the calculation state.
VoxelizedMarkMemo	MemoForIndex.getMemoForIndex(int index)	Retrieves the VoxelizedMarkMemo for the specified index.

Uses of VoxelizedMarkMemo in org.anchoranalysis.mpp.overlap

Methods in org.anchoranalysis.mpp.overlap with parameters of type VoxelizedMarkMemo

Modifier and Type	Method	Description
static double	OverlapUtilities.overlapWith(VoxelizedMarkMemo memo1, VoxelizedMarkMemo memo2, int regionID)	Calculates the overlap between two voxelized marks for a specific region.
static double	OverlapUtilities.overlapWithMaskGlobal(VoxelizedMarkMemo memo1, VoxelizedMarkMemo memo2, int regionID, Voxels<UnsignedByteBuffer> globalMask, byte onGlobalMask)	Counts the number of overlapping voxels between two VoxelizedMarkMemo objects, considering a global mask.

Uses of VoxelizedMarkMemo in org.anchoranalysis.mpp.pair

Methods in org.anchoranalysis.mpp.pair that return VoxelizedMarkMemo

Modifier and Type	Method	Description
VoxelizedMarkMemo	PairVoxelizedMarkMemo.getDestination()	Gets the destination VoxelizedMarkMemo.
VoxelizedMarkMemo	PairVoxelizedMarkMemo.getSource()	Gets the source VoxelizedMarkMemo.

Constructors in org.anchoranalysis.mpp.pair with parameters of type VoxelizedMarkMemo

Modifier	Constructor	Description
	PairVoxelizedMarkMemo(VoxelizedMarkMemo source, VoxelizedMarkMemo destination)	Constructs a new PairVoxelizedMarkMemo.

Uses of VoxelizedMarkMemo in org.anchoranalysis.mpp.proposer

Methods in org.anchoranalysis.mpp.proposer that return VoxelizedMarkMemo

Modifier and Type	Method	Description
VoxelizedMarkMemo	ProposerContext.create(Mark mark)	Creates a VoxelizedMarkMemo for the given mark.