Package org.anchoranalysis.mpp.mark.conic

Class ConicBase

Object

org.anchoranalysis.mpp.mark.Mark

org.anchoranalysis.mpp.mark.MarkWithPosition

org.anchoranalysis.mpp.mark.conic.ConicBase

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

Ellipse, Ellipsoid

public abstract class ConicBase
extends MarkWithPosition

Abstract base class for conic marks (e.g., ellipsoids, spheres).

This class extends MarkWithPosition to provide common functionality for conic-shaped marks in 3D space.

See Also:

Serialized Form

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	ConicBase()	Default constructor.
protected	ConicBase(MarkWithPosition source)	Constructor that copies from another MarkWithPosition.

Method Summary

Modifier and Type	Method	Description
abstract double[]	createRadiiArray()	Creates an array of radii in their original units.
abstract double[]	createRadiiArrayResolved(Optional<Resolution> resolution)	Creates an array of radii resolved to the given resolution.
double[]	radiiOrdered()	Returns an ordered array of radii in their original units.
double[]	radiiOrderedResolved(Optional<Resolution> resolution)	Returns an ordered array of radii resolved to the given resolution.
abstract void	setMarksExplicit(org.anchoranalysis.spatial.point.Point3d position)	Sets the mark's position explicitly.
abstract void	setMarksExplicit(org.anchoranalysis.spatial.point.Point3d position, org.anchoranalysis.spatial.orientation.Orientation orientation)	Sets the mark's position and orientation explicitly.
abstract void	setMarksExplicit(org.anchoranalysis.spatial.point.Point3d pos, org.anchoranalysis.spatial.orientation.Orientation orientation, org.anchoranalysis.spatial.point.Point3d radii)	Sets the mark's properties explicitly.

Methods inherited from class org.anchoranalysis.mpp.mark.MarkWithPosition

centerPoint, equalsDeep, getPosition, positionString, scale, setPosition

Methods inherited from class org.anchoranalysis.mpp.mark.Mark

box, boxAllRegions, deriveObject, duplicate, equalsID, getIdentifier, getName, identifier, isPointInside, numberDimensions, numberRegions, quickOverlap, setId, volume

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ConicBase

protected ConicBase()

Default constructor.

ConicBase

protected ConicBase(MarkWithPosition source)

Constructor that copies from another MarkWithPosition.

Parameters:

source - the source MarkWithPosition to copy from

Method Details

createRadiiArrayResolved

public abstract double[] createRadiiArrayResolved(Optional<Resolution> resolution)

Creates an array of radii resolved to the given resolution.

Parameters:

resolution - an optional resolution to consider

Returns:

an array of resolved radii

createRadiiArray

public abstract double[] createRadiiArray()

Creates an array of radii in their original units.

Returns:

an array of radii

setMarksExplicit

public abstract void setMarksExplicit(org.anchoranalysis.spatial.point.Point3d pos, org.anchoranalysis.spatial.orientation.Orientation orientation, org.anchoranalysis.spatial.point.Point3d radii)

Sets the mark's properties explicitly.

Parameters:

pos - the position of the mark

orientation - the orientation of the mark

radii - the radii of the mark

setMarksExplicit

public abstract void setMarksExplicit(org.anchoranalysis.spatial.point.Point3d position, org.anchoranalysis.spatial.orientation.Orientation orientation)

Sets the mark's position and orientation explicitly.

Parameters:

position - the position of the mark

orientation - the orientation of the mark

setMarksExplicit

public abstract void setMarksExplicit(org.anchoranalysis.spatial.point.Point3d position)

Sets the mark's position explicitly.

Parameters:

position - the position of the mark

radiiOrderedResolved

public double[] radiiOrderedResolved(Optional<Resolution> resolution)

Returns an ordered array of radii resolved to the given resolution.

Parameters:

resolution - an optional resolution to consider

Returns:

an ordered array of resolved radii

radiiOrdered

public double[] radiiOrdered()

Returns an ordered array of radii in their original units.

Returns:

an ordered array of radii