Uses of Class
org.anchoranalysis.mpp.mark.MarkCollection

Packages that use MarkCollection

Package	Description
org.anchoranalysis.mpp.bean.points	Operations based on sets of points.
org.anchoranalysis.mpp.bean.proposer	Proposing Marks or other data-structures with particular attributes.
org.anchoranalysis.mpp.init	Parameters used to initialize certain types of beans.
org.anchoranalysis.mpp.mark	Non-bean classes related to Marks.
org.anchoranalysis.mpp.overlay	Any Overlay related to a Mark.

Uses of MarkCollection in org.anchoranalysis.mpp.bean.points

Methods in org.anchoranalysis.mpp.bean.points with parameters of type MarkCollection

Modifier and Type	Method	Description
Optional<Mark>	CreateMarkFromPoints.fitMarkToPointsFromMarks(MarkCollection marks, Dimensions dimensions)	Extracts points from marks, creates a new mark, and fits this mark to the extracted points.

Uses of MarkCollection in org.anchoranalysis.mpp.bean.proposer

Methods in org.anchoranalysis.mpp.bean.proposer that return types with arguments of type MarkCollection

Modifier and Type	Method	Description
abstract Optional<MarkCollection>	MarkCollectionProposer.propose(MarkWithIdentifierFactory markFactory, ProposerContext context)	Proposes a collection of marks.

Methods in org.anchoranalysis.mpp.bean.proposer with parameters of type MarkCollection

Modifier and Type	Method	Description
abstract Optional<Mark>	MarkFromCollectionProposer.selectMarkFrom(MarkCollection marks, ProposerContext context)	Selects a mark from a collection of marks.

Uses of MarkCollection in org.anchoranalysis.mpp.init

Methods in org.anchoranalysis.mpp.init that return types with arguments of type MarkCollection

Modifier and Type	Method	Description
NamedProviderStore<MarkCollection>	MarksInitialization.marks()	Store for mark collections.

Uses of MarkCollection in org.anchoranalysis.mpp.mark

Methods in org.anchoranalysis.mpp.mark that return MarkCollection

Modifier and Type	Method	Description
MarkCollection	MarkCollection.createMerged(MarkCollection toMerge)	Creates a new collection by merging this collection with another.
MarkCollection	MarkCollection.deepCopy()	Creates a deep copy of the collection.
MarkCollection	ColoredMarks.getMarks()
MarkCollection	MarkCollection.marksAt(org.anchoranalysis.spatial.point.Point3i point, RegionMap regionMap, int regionID)	Finds marks at a specific point that belong to a specific region.
MarkCollection	MarkCollection.shallowCopy()	Creates a shallow copy of the collection.

Methods in org.anchoranalysis.mpp.mark with parameters of type MarkCollection

Modifier and Type	Method	Description
void	ColoredMarks.addAll(MarkCollection marks, RGBColor color)	Adds all marks from a MarkCollection with the same color.
void	MarkCollection.addAll(MarkCollection marks)	Adds all marks from another collection to this collection.
MarkCollection	MarkCollection.createMerged(MarkCollection toMerge)	Creates a new collection by merging this collection with another.
boolean	MarkCollection.equalsDeep(MarkCollection other)	Checks if this collection is deeply equal to another.

Constructors in org.anchoranalysis.mpp.mark with parameters of type MarkCollection

Constructor	Description
ColoredMarks(MarkCollection marks, ColorIndex colorIndex, IdentifierGetter<Mark> colorIDGetter)	Creates a ColoredMarks instance from a MarkCollection and assigns colors based on a ColorIndex.
ColoredMarks(MarkCollection marks, ColorList colorList)

Uses of MarkCollection in org.anchoranalysis.mpp.overlay

Methods in org.anchoranalysis.mpp.overlay that return MarkCollection

Modifier and Type	Method	Description
static MarkCollection	OverlayCollectionMarkFactory.marksFromOverlays(OverlayCollection overlays)	Creates a MarkCollection from an OverlayCollection.

Methods in org.anchoranalysis.mpp.overlay with parameters of type MarkCollection

Modifier and Type	Method	Description
static OverlayCollection	OverlayCollectionMarkFactory.createWithoutColor(MarkCollection marks, RegionMembershipWithFlags regionMembership)	Creates an OverlayCollection from a MarkCollection without color information.