Uses of Class
org.anchoranalysis.mpp.mark.ColoredMarks

Packages that use ColoredMarks

Package	Description
org.anchoranalysis.mpp.mark	Non-bean classes related to Marks.
org.anchoranalysis.mpp.overlay	Any Overlay related to a Mark.

Uses of ColoredMarks in org.anchoranalysis.mpp.mark

Methods in org.anchoranalysis.mpp.mark that return ColoredMarks

Modifier and Type	Method	Description
ColoredMarks	ColoredMarks.createMerged(ColoredMarks toMerge)	Merges this ColoredMarks with another, avoiding duplicates.
ColoredMarks	ColoredMarks.deepCopy()	Creates a deep copy of this ColoredMarks instance.
ColoredMarks	ColoredMarks.shallowCopy()	Creates a shallow copy of this ColoredMarks instance.
ColoredMarks	ColoredMarks.subsetWhereBBoxIntersects(Dimensions dimensions, int regionID, List<org.anchoranalysis.spatial.box.BoundingBox> intersectList)	Creates a subset of marks whose bounding boxes intersect with given boxes.

Methods in org.anchoranalysis.mpp.mark with parameters of type ColoredMarks

Modifier and Type	Method	Description
void	ColoredMarks.addAll(ColoredMarks marks)	Adds all marks and colors from another ColoredMarks instance.
ColoredMarks	ColoredMarks.createMerged(ColoredMarks toMerge)	Merges this ColoredMarks with another, avoiding duplicates.

Uses of ColoredMarks in org.anchoranalysis.mpp.overlay

Methods in org.anchoranalysis.mpp.overlay that return ColoredMarks

Modifier and Type	Method	Description
static ColoredMarks	OverlayCollectionMarkFactory.marksFromOverlays(ColoredOverlayCollection overlays)	Creates ColoredMarks from a ColoredOverlayCollection.

Methods in org.anchoranalysis.mpp.overlay with parameters of type ColoredMarks

Modifier and Type	Method	Description
static ColoredOverlayCollection	OverlayCollectionMarkFactory.createColor(ColoredMarks marks, RegionMembershipWithFlags regionMembership)	Creates a ColoredOverlayCollection from ColoredMarks.