Index (anchor-imagej 1.0.0 API)

A C F I O P R T V W
All Classes and Interfaces|All Packages|Serialized Form

A

asByte(ImageProcessor) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToVoxelBuffer: Convert a ImageProcessor to VoxelBuffer<UnsignedByteBuffer>
asFloat(ImageProcessor) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToVoxelBuffer: Convert a ImageProcessor to VoxelBuffer<FloatBuffer>
asShort(ImageProcessor) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToVoxelBuffer: Convert a ImageProcessor to VoxelBuffer<UnsignedShortBuffer>

C

canValueRangeChange() - Method in class org.anchoranalysis.io.imagej.resizer.VoxelsResizerImageJ
ConvertFromImagePlus - Class in org.anchoranalysis.io.imagej.convert: Converts an ImagePlus into a channel or voxels.
ConvertToImagePlus - Class in org.anchoranalysis.io.imagej.convert: Converts a channel or voxels into a ImagePlus.
ConvertToImageProcessor - Class in org.anchoranalysis.io.imagej.convert: Converts other voxel data-structures (as used by Anchor) to an ImageJ ImageProcessor.
ConvertToVoxelBuffer - Class in org.anchoranalysis.io.imagej.convert: Converts a ImageProcessor to a voxel-buffer of particular data-type.
createVoxelsResizer() - Method in class org.anchoranalysis.io.imagej.bean.interpolator.ImageJ

F

fileFormat(StackWriteOptions) - Method in class org.anchoranalysis.io.imagej.bean.stack.writer.PNG
fileFormat(StackWriteOptions) - Method in class org.anchoranalysis.io.imagej.bean.stack.writer.Tiff
from(Channel) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImagePlus: Creates an ImagePlus from a Channel.
from(Stack, boolean) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImagePlus: Creates an ImagePlus from a Stack.
from(VoxelsUntyped) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImagePlus: Creates an ImagePlus from a VoxelsUntyped.
from(VoxelsUntyped, int) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImageProcessor: Creates a ImageProcessor by extracting a slice from a VoxelsUntyped.
fromByte(SliceBufferIndex<UnsignedByteBuffer>, int) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImageProcessor: Creates a ImageProcessor by extracting a slice from a SliceBufferIndex of type UnsignedByteBuffer.
fromByte(VoxelBuffer<UnsignedByteBuffer>, Extent) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImageProcessor: Creates a ImageProcessor from voxel-buffer (of type ByteBuffer) that is already a slice.
fromFloat(VoxelBuffer<FloatBuffer>, Extent) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImageProcessor: Creates a ImageProcessor from voxel-buffer (of type FloatBuffer) that is already a slice.
fromShort(SliceBufferIndex<UnsignedShortBuffer>, int) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImageProcessor: Creates a ImageProcessor by extracting a slice from a SliceBufferIndex of type UnsignedShortBuffer.
fromShort(VoxelBuffer<UnsignedShortBuffer>, Extent) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImageProcessor: Creates a ImageProcessor from voxel-buffer (of type ShortBuffer) that is already a slice.
fromSlice(Voxels<UnsignedByteBuffer>, int, String) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertToImagePlus: Creates an ImagePlus from one slice of a Voxels<UnsignedByteBuffer> voxels.

I

ImageJ - Class in org.anchoranalysis.io.imagej.bean.interpolator: Resizes with linear interpolation as implemented in ImageJ.
ImageJ() - Constructor for class org.anchoranalysis.io.imagej.bean.interpolator.ImageJ
ImageJConversionException - Exception Class in org.anchoranalysis.io.imagej.convert: When conversion to ImageJ data/type is not possible, or an error occurs during conversion.
ImageJConversionException(Exception) - Constructor for exception class org.anchoranalysis.io.imagej.convert.ImageJConversionException: Creates with a message.
ImageJConversionException(String) - Constructor for exception class org.anchoranalysis.io.imagej.convert.ImageJConversionException: Creates with a message.
ImageJRasterWriter - Class in org.anchoranalysis.io.imagej.bean.stack.writer: Base class for writing a raster using ImageJ.
ImageJRasterWriter() - Constructor for class org.anchoranalysis.io.imagej.bean.stack.writer.ImageJRasterWriter

O

org.anchoranalysis.io.imagej.bean.interpolator - package org.anchoranalysis.io.imagej.bean.interpolator: Performing interpolation with ImageJ.
org.anchoranalysis.io.imagej.bean.stack.writer - package org.anchoranalysis.io.imagej.bean.stack.writer: Raster-writers that use ImageJ to write images to the filesystem.
org.anchoranalysis.io.imagej.convert - package org.anchoranalysis.io.imagej.convert: Converts to and from ImageJ data-structures for images.
org.anchoranalysis.io.imagej.resizer - package org.anchoranalysis.io.imagej.resizer: Image interpolation when scaling using ImageJ.

P

PNG - Class in org.anchoranalysis.io.imagej.bean.stack.writer: Writes a PNG image using ImageJ.
PNG() - Constructor for class org.anchoranalysis.io.imagej.bean.stack.writer.PNG

R

resizeByte(VoxelBuffer<UnsignedByteBuffer>, VoxelBuffer<UnsignedByteBuffer>, Extent, Extent) - Method in class org.anchoranalysis.io.imagej.resizer.VoxelsResizerImageJ
resizeFloat(VoxelBuffer<FloatBuffer>, VoxelBuffer<FloatBuffer>, Extent, Extent) - Method in class org.anchoranalysis.io.imagej.resizer.VoxelsResizerImageJ
resizeShort(VoxelBuffer<UnsignedShortBuffer>, VoxelBuffer<UnsignedShortBuffer>, Extent, Extent) - Method in class org.anchoranalysis.io.imagej.resizer.VoxelsResizerImageJ

T

Tiff - Class in org.anchoranalysis.io.imagej.bean.stack.writer: Writes a TIFF image using ImageJ.
Tiff() - Constructor for class org.anchoranalysis.io.imagej.bean.stack.writer.Tiff
toChannel(ImagePlus, Optional<Resolution>) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertFromImagePlus: Converts an ImagePlus to a Channel.
toVoxels(ImagePlus) - Static method in class org.anchoranalysis.io.imagej.convert.ConvertFromImagePlus: Converts an ImagePlus to a VoxelsUntyped.

V

VoxelsResizerImageJ - Class in org.anchoranalysis.io.imagej.resizer: Resizes with linear interpolation as implemented in ImageJ.
VoxelsResizerImageJ() - Constructor for class org.anchoranalysis.io.imagej.resizer.VoxelsResizerImageJ

W

writeRaster(FileSaver, String, boolean) - Method in class org.anchoranalysis.io.imagej.bean.stack.writer.ImageJRasterWriter: Writes an annotation to the filesystem at outPath.
writeRaster(FileSaver, String, boolean) - Method in class org.anchoranalysis.io.imagej.bean.stack.writer.PNG
writeRaster(FileSaver, String, boolean) - Method in class org.anchoranalysis.io.imagej.bean.stack.writer.Tiff
writeStack(Stack, Path, StackWriteOptions) - Method in class org.anchoranalysis.io.imagej.bean.stack.writer.ImageJRasterWriter
writeStackTime(Stack, Path, boolean) - Method in class org.anchoranalysis.io.imagej.bean.stack.writer.ImageJRasterWriter: Writes a stack as a time-sequence (many images together in a single file.).

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All Classes and Interfaces|All Packages|Serialized Form