Package org.anchoranalysis.io.imagej.convert

Class ConvertToImagePlus

Object
org.anchoranalysis.io.imagej.convert.ConvertToImagePlus
public class ConvertToImagePlus
extends Object
Converts a channel or voxels into a ImagePlus.
Author:
Owen Feehan

  • Method Summary

    Modifier and Type Method Description
    static ij.ImagePlus from​(Channel channel)
    Creates an ImagePlus from a Channel.
    static ij.ImagePlus from​(Stack stack, boolean makeRGB)
    Creates an ImagePlus from a Stack.
    static ij.ImagePlus from​(org.anchoranalysis.image.voxel.VoxelsUntyped voxels)
    Creates an ImagePlus from a VoxelsUntyped.
    static ij.ImagePlus fromSlice​(org.anchoranalysis.image.voxel.Voxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer> voxels, int sliceIndex, String name)
    Creates an ImagePlus from one slice of a Voxels<UnsignedByteBuffer> voxels.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Method Details

    • from

      public static ij.ImagePlus from​(org.anchoranalysis.image.voxel.VoxelsUntyped voxels) throws ImageJConversionException
      Creates an ImagePlus from a VoxelsUntyped.

      The default image-resolution (see Resolution() is employed.

      Parameters:
      voxels - the voxels to be converted
      Returns:
      a newly created image-plus, reusing the input voxel's buffer without copying.
      Throws:
      ImageJConversionException - if the voxels are neither unsigned byte nor unsigned short (the only two supported types)

    • from

      public static ij.ImagePlus from​(Channel channel) throws ImageJConversionException
      Creates an ImagePlus from a Channel.
      Parameters:
      channel - the channel to be converted
      Returns:
      a newly created image-plus, reusing the input channels's buffer without copying.
      Throws:
      ImageJConversionException - if the voxels are neither unsigned byte nor unsigned short (the only two supported types)

    • from

      public static ij.ImagePlus from​(Stack stack, boolean makeRGB) throws ImageJConversionException
      Creates an ImagePlus from a Stack.
      Parameters:
      stack - the stack of channels to be converted
      makeRGB - if true, the stack is assumed to have respectively red, green, blue channels exactly. and outputted as a RGB-type image, otherwise an interleaved image-stack is created.
      Returns:
      a newly created image-plus, reusing the input channels's buffer without copying.
      Throws:
      ImageJConversionException - if any RGB channel is not unsigned 8-bit

    • fromSlice

      public static ij.ImagePlus fromSlice​(org.anchoranalysis.image.voxel.Voxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer> voxels, int sliceIndex, String name)
      Creates an ImagePlus from one slice of a Voxels<UnsignedByteBuffer> voxels.
      Parameters:
      voxels - the voxels from which a slice will be extracted to be converted
      sliceIndex - slice-index (z coordinate) to extract
      name - the name to use in the image-plus
      Returns:
      a newly created image-plus, reusing the input channels's buffer without copying.