Uses of Class
org.anchoranalysis.image.voxel.object.ObjectCollection

Packages that use ObjectCollection

Package	Description
org.anchoranalysis.image.voxel.binary.connected	Creating an ObjectCollection that is a connected component labelling of a BinaryVoxels.
org.anchoranalysis.image.voxel.neighborhood	A region in proximity to a voxel, encompassing this voxel as well as others.
org.anchoranalysis.image.voxel.object	The fundamental data class that is an ObjectMask and related structures.

Uses of ObjectCollection in org.anchoranalysis.image.voxel.binary.connected

Methods in org.anchoranalysis.image.voxel.binary.connected that return ObjectCollection

Modifier and Type	Method	Description
ObjectCollection	ObjectsFromConnectedComponentsFactory.createUnsignedByte(BinaryVoxels<UnsignedByteBuffer> voxels)	Finds the connected-components in unsigned byte voxels.
ObjectCollection	ObjectsFromConnectedComponentsFactory.createUnsignedInt(BinaryVoxels<UnsignedIntBuffer> voxels)	Finds the connected-components in unsigned int voxels.

Uses of ObjectCollection in org.anchoranalysis.image.voxel.neighborhood

Methods in org.anchoranalysis.image.voxel.neighborhood with parameters of type ObjectCollection

Modifier and Type	Method	Description
static GraphWithPayload<ObjectMask,Integer>	NeighborGraph.create(ObjectCollection objects, Extent sceneExtent, boolean preventObjectIntersection, boolean do3D)	Create the graph with object-masks as vertices, where edges represent the number of neighboring voxels between objects.

Uses of ObjectCollection in org.anchoranalysis.image.voxel.object

Methods in org.anchoranalysis.image.voxel.object that return ObjectCollection

Modifier and Type	Method	Description
ObjectCollection	ObjectCollection.createSubset(Collection<Integer> indices)	A subset of the collection identified by particular indices.
ObjectCollection	ObjectCollection.duplicate()	Deep copy, including duplicating ObjectMasks.
ObjectCollection	ObjectCollection.duplicateShallow()	Shallow copy of objects.
static ObjectCollection	ObjectCollectionFactory.empty()	Creates a newly created object-collection that is empty.
ObjectCollection	ObjectMaskStream.filter(Predicate<ObjectMask> predicate)	Filters a ObjectCollection to include certain items based on a predicate
<E extends Exception> ObjectCollection	ObjectMaskStream.filter(CheckedPredicate<ObjectMask,E> predicate, Class<? extends Exception> throwableClass)	Filters a ObjectCollection to include certain items based on a predicate
ObjectCollection	ObjectMaskStream.filterAndMap(Predicate<ObjectMask> predicate, UnaryOperator<ObjectMask> mapFunction)	Performs a ObjectMaskStream.filter(java.util.function.Predicate<org.anchoranalysis.image.voxel.object.ObjectMask>) and then a ObjectMaskStream.map(org.anchoranalysis.core.functional.checked.CheckedFunction<org.anchoranalysis.image.voxel.object.ObjectMask, org.anchoranalysis.image.voxel.object.ObjectMask, E>).
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.filterAndMapFrom(Collection<T> collection, Predicate<T> predicate, Class<? extends E> throwableClass, CheckedFunction<T,ObjectMask,E> mapFunction)	Creates a new collection by filtering an iterable and then mapping it to ObjectMask.
static <T> ObjectCollection	ObjectCollectionFactory.filterAndMapFrom(Collection<T> collection, Predicate<T> predicate, Function<T,ObjectMask> mapFunction)	Creates a new collection by filtering an iterable and then mapping it to ObjectMask.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.filterAndMapWithIndexFrom(List<T> list, Predicate<T> predicate, Class<? extends E> throwableClass, CheckedBiFunction<T,Integer,ObjectMask,E> mapFunctionWithIndex)	Creates a new collection by filtering a list and then mapping from it to ObjectMask.
ObjectCollection	ObjectMaskStream.filterExclude(Predicate<ObjectMask> predicate)	Filters a ObjectCollection to exclude certain items based on a predicate
ObjectCollection	ObjectMaskStream.filterSubset(Predicate<ObjectMask> predicate, Collection<Integer> indices)	Like ObjectMaskStream.filter(java.util.function.Predicate<org.anchoranalysis.image.voxel.object.ObjectMask>) but only operates on certain indices of the collection.
<E extends Exception> ObjectCollection	ObjectMaskStream.flatMap(Class<? extends Exception> throwableClass, CheckedFunction<ObjectMask,ObjectCollection,E> mapFunction)	Like a typical flatMap() operation but accepts a mapping function that throws a checked exception.
ObjectCollection	ObjectMaskStream.flatMap(Function<ObjectMask,ObjectCollection> mapFunction)	Creates a new ObjectCollection after mapping each item to several others.
static <T> ObjectCollection	ObjectCollectionFactory.flatMapFrom(Collection<T> collection, Function<T,ObjectCollection> mapFunction)	Creates a new collection by flat-mapping an incoming stream to ObjectCollection.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.flatMapFrom(Stream<T> stream, Class<? extends Exception> throwableClass, CheckedFunction<T,ObjectCollection,E> mapFunction)	Creates a new collection by flat-mapping an incoming stream to ObjectCollection and rethrowing any exception during mapping.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.flatMapFromCollection(Stream<T> stream, Class<? extends Exception> throwableClass, CheckedFunction<T,Stream<? extends ObjectMask>,E> mapFunction)	Creates a new ObjectCollection by flatMapping an incoming stream to Collection<ObjectMask> and rethrowing any exception during mapping.
static <E extends Exception> ObjectCollection	ObjectCollectionFactory.flatMapFromRange(int startInclusive, int endExclusive, Class<? extends Exception> throwableClass, CheckedIntFunction<ObjectCollection,E> mapFunction)	Creates a new collection by flat-mapping integers (from a range) each to a ObjectCollection.
static ObjectCollection	ObjectCollectionFactory.flatMapFromRange(int startInclusive, int endExclusive, IntFunction<ObjectCollection> mapFunction)	Creates a new collection by flat-mapping integers (from a range) each to a ObjectCollection.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.flatMapFromStream(Stream<T> stream, Class<? extends Exception> throwableClass, CheckedFunction<T,Stream<ObjectMask>,E> mapFunction)	Creates a new collection by flat-mapping an incoming stream to ObjectCollection and rethrowing any exception during mapping.
static ObjectCollection	ObjectCollectionFactory.fromRepeated(int repeats, Supplier<ObjectMask> createObjectMask)	Creates a new collection by repeatedly calling a function to create a single ObjectMask.
static ObjectCollection	ObjectCollectionFactory.fromSet(Set<ObjectMask> set)	Creates a new collection from a set of ObjectMask.
<E extends Exception> ObjectCollection	ObjectMaskStream.map(CheckedFunction<ObjectMask,ObjectMask,E> mapFunction)	Creates a new ObjectCollection after mapping each item to another.
ObjectCollection	ObjectMaskStream.mapBoundingBoxChangeExtent(BoundingBox boxToAssign)	Creates a new ObjectCollection after mapping the bounding-box on each object (while maybe changing the extent).
ObjectCollection	ObjectMaskStream.mapBoundingBoxPreserveExtent(UnaryOperator<BoundingBox> mapFunction)	Creates a new ObjectCollection after mapping the bounding-box on each object (whose extent should remain unchanged).
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.mapFrom(Iterable<T> iterable, Class<? extends E> throwableClass, CheckedFunction<T,ObjectMask,E> mapFunction)	Creates a new collection by mapping an Iterable to ObjectMask.
static <T> ObjectCollection	ObjectCollectionFactory.mapFrom(Iterable<T> iterable, Function<T,ObjectMask> mapFunction)	Creates a new collection by mapping an Iterable to ObjectMask.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.mapFromOptional(Iterable<T> iterable, Class<? extends Exception> throwableClass, CheckedFunction<T,Optional<ObjectMask>,E> mapFunction)	Creates a new collection by mapping an Iterable to Optional.
static <T> ObjectCollection	ObjectCollectionFactory.mapFromOptional(Iterable<T> iterable, Function<T,Optional<ObjectMask>> mapFunction)	Creates a new collection by mapping an Iterable to Optional.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.mapFromOptional(Iterator<T> iterator, Class<? extends Exception> throwableClass, CheckedFunction<T,Optional<ObjectMask>,E> mapFunction)	Creates a new collection by mapping an Iterator to Optional.
static <T> ObjectCollection	ObjectCollectionFactory.mapFromOptional(Iterator<T> iterator, Function<T,Optional<ObjectMask>> mapFunction)	Creates a new collection by mapping an Iterator to Optional.
static <E extends Exception> ObjectCollection	ObjectCollectionFactory.mapFromRange(int startInclusive, int endExclusive, Class<? extends Exception> throwableClass, CheckedIntFunction<ObjectMask,E> mapFunction)	Creates a new collection by mapping integers (from a range) each to a ObjectMask.
static ObjectCollection	ObjectCollectionFactory.mapFromRange(int startInclusive, int endExclusive, IntFunction<ObjectMask> mapFunction)	Creates a new collection by mapping integers (from a range) each to a ObjectMask.
static ObjectCollection	ObjectCollectionFactory.of(Collection<ObjectMask>... collections)	Creates a new collection with elements copied from existing collections.
static ObjectCollection	ObjectCollectionFactory.of(Optional<ObjectCollection>... collections)	Creates a new collection with elements copied from existing collections, if they exist.
static ObjectCollection	ObjectCollectionFactory.of(BinaryVoxels<UnsignedByteBuffer>... masks)	Creates a new collection with elements from the parameter-list of BinaryVoxels converting the voxels in their entirety to an object-mask at the origin.
static ObjectCollection	ObjectCollectionFactory.of(ObjectCollection... collection)	Creates a new collection with elements copied from existing collections.
static ObjectCollection	ObjectCollectionFactory.of(ObjectMask... object)	Creates a new collection with elements from the parameter-list.
ObjectCollection	ObjectCollection.shiftBy(ReadableTuple3i shiftBy)	Shifts the bounding-box of each object by adding to it.

Methods in org.anchoranalysis.image.voxel.object with parameters of type ObjectCollection

Modifier and Type	Method	Description
static IntersectingObjects<ObjectMask>	IntersectingObjects.create(ObjectCollection objects)	Creates from an ObjectCollection.
boolean	ObjectCollection.equalsDeep(ObjectCollection other)	Checks if two collections are equal in a deeper way.
static ObjectCollection	ObjectCollectionFactory.of(ObjectCollection... collection)	Creates a new collection with elements copied from existing collections.

Method parameters in org.anchoranalysis.image.voxel.object with type arguments of type ObjectCollection

Modifier and Type	Method	Description
<E extends Exception> ObjectCollection	ObjectMaskStream.flatMap(Class<? extends Exception> throwableClass, CheckedFunction<ObjectMask,ObjectCollection,E> mapFunction)	Like a typical flatMap() operation but accepts a mapping function that throws a checked exception.
ObjectCollection	ObjectMaskStream.flatMap(Function<ObjectMask,ObjectCollection> mapFunction)	Creates a new ObjectCollection after mapping each item to several others.
static <T> ObjectCollection	ObjectCollectionFactory.flatMapFrom(Collection<T> collection, Function<T,ObjectCollection> mapFunction)	Creates a new collection by flat-mapping an incoming stream to ObjectCollection.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.flatMapFrom(Stream<T> stream, Class<? extends Exception> throwableClass, CheckedFunction<T,ObjectCollection,E> mapFunction)	Creates a new collection by flat-mapping an incoming stream to ObjectCollection and rethrowing any exception during mapping.
static <E extends Exception> ObjectCollection	ObjectCollectionFactory.flatMapFromRange(int startInclusive, int endExclusive, Class<? extends Exception> throwableClass, CheckedIntFunction<ObjectCollection,E> mapFunction)	Creates a new collection by flat-mapping integers (from a range) each to a ObjectCollection.
static ObjectCollection	ObjectCollectionFactory.flatMapFromRange(int startInclusive, int endExclusive, IntFunction<ObjectCollection> mapFunction)	Creates a new collection by flat-mapping integers (from a range) each to a ObjectCollection.

Constructors in org.anchoranalysis.image.voxel.object with parameters of type ObjectCollection

Constructor	Description
ObjectMaskStream(ObjectCollection delegate)