Package org.anchoranalysis.image.voxel.convert

Class VoxelsConverter<T>

Object
org.anchoranalysis.image.voxel.convert.VoxelsConverter<T>
Type Parameters:
T - destination-type (what the voxels will be converted to).
Direct Known Subclasses:
ToFloatNoScaling, ToUnsignedByte, ToUnsignedInt, ToUnsignedShortNoScaling, ToUnsignedShortScaleByType
public abstract class VoxelsConverter<T>
extends Object
Converts voxels from one data-type to another.
Author:
Owen Feehan

  • Constructor Details

  • Method Details

    • convertFrom

      public Voxels<T> convertFrom​(VoxelsUntyped from, VoxelsFactoryTypeBound<T> factory)
      Creates a new voxels of type T and copies the voxels from from.
      Parameters:
      from - where the voxels are copied from (the source).
      factory - a factory that creates Voxels of type T.
      Returns:
      a newly created Voxels with values copied from source.

    • copyFrom

      public void copyFrom​(VoxelsUntyped from, Voxels<T> to) throws OperationFailedException
      Copies voxels from a source (of any type) to voxels of type T.
      Parameters:
      from - where the voxels are copied from (the source)
      to - where the voxels are copied to (the destination)
      Throws:
      OperationFailedException - if the extents of from and to are not equal.

    • copyFromUnsignedByte

      public void copyFromUnsignedByte​(Voxels<UnsignedByteBuffer> from, Voxels<T> to) throws OperationFailedException
      Copies voxels from a source of type @{link UnsignedByteBuffer} to voxels of type T.
      Parameters:
      from - where the voxels are copied from (the source).
      to - where the voxels are copied to (the destination).
      Throws:
      OperationFailedException - if the extents of from and to are not equal.

    • copyFromUnsignedShort

      public void copyFromUnsignedShort​(Voxels<UnsignedShortBuffer> from, Voxels<T> to) throws OperationFailedException
      Copies voxels from a source of type @{link UnsignedShortBuffer} to voxels of type T.
      Parameters:
      from - where the voxels are copied from (the source).
      to - where the voxels are copied to (the destination).
      Throws:
      OperationFailedException - if the extents of from and to are not equal.

    • copyFromUnsignedInt

      public void copyFromUnsignedInt​(Voxels<UnsignedIntBuffer> from, Voxels<T> to) throws OperationFailedException
      Copies voxels from a source of type @{link UnsignedIntBuffer} to voxels of type T.
      Parameters:
      from - where the voxels are copied from (the source).
      to - where the voxels are copied to (the destination).
      Throws:
      OperationFailedException - if the extents of from and to are not equal.

    • copyFromFloat

      public void copyFromFloat​(Voxels<FloatBuffer> from, Voxels<T> to) throws OperationFailedException
      Copies voxels from a source of type @{link FloatBuffer} to voxels of type T.
      Parameters:
      from - where the voxels are copied from (the source).
      to - where the voxels are copied to (the destination).
      Throws:
      OperationFailedException - if the extents of from and to are not equal.

    • convertUnsignedByte

      protected abstract void convertUnsignedByte​(UnsignedByteBuffer in, T out)
      Copies a value from the current position in a UnsignedByteBuffer to the current position in a buffer of type T.
      Parameters:
      in - the current position of this buffer gives the value to convert, and the position is incremented.
      out - the converted value is written to the current position of this buffer, and the position is incremented.

    • convertUnsignedShort

      protected abstract void convertUnsignedShort​(UnsignedShortBuffer in, T out)
      Copies a value from the current position in a UnsignedShortBuffer to the current position in a buffer of type T.
      Parameters:
      in - the current position of this buffer gives the value to convert, and the position is incremented.
      out - the converted value is written to the current position of this buffer, and the position is incremented.

    • convertUnsignedInt

      protected abstract void convertUnsignedInt​(UnsignedIntBuffer in, T out)
      Copies a value from the current position in a UnsignedIntBuffer to the current position in a buffer of type T.
      Parameters:
      in - the current position of this buffer gives the value to convert, and the position is incremented.
      out - the converted value is written to the current position of this buffer, and the position is incremented.

    • convertFloat

      protected abstract void convertFloat​(FloatBuffer in, T out)
      Copies a value from the current position in a FloatBuffer to the current position in a buffer of type T.
      Parameters:
      in - the current position of this buffer gives the value to convert, and the position is incremented.
      out - the converted value is written to the current position of this buffer, and the position is incremented.