Uses of Class
org.anchoranalysis.image.voxel.VoxelsUntyped
| Package | Description |
|---|---|
| org.anchoranalysis.image.voxel |
Data-structures to store and manipulate image raster-data or voxels.
|
| org.anchoranalysis.image.voxel.convert |
Converting
Voxels to different data-types. |
| org.anchoranalysis.image.voxel.convert.imglib2 |
Converts anchor data-structures to those used by ImgLib2.
|
| org.anchoranalysis.image.voxel.factory |
Creates new instances of
Voxels and VoxelsUntyped with specific data-types. |
| org.anchoranalysis.image.voxel.resizer |
Different interpolator methods to use when scaling voxels.
|
| org.anchoranalysis.image.voxel.statistics |
Statistics about aggregated voxel intensities.
|
| org.anchoranalysis.image.voxel.thresholder |
Thresholding operations on voxels.
|
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Uses of VoxelsUntyped in org.anchoranalysis.image.voxel
Methods in org.anchoranalysis.image.voxel with parameters of type VoxelsUntyped Modifier and Type Method Description voidVoxelsUntyped. copyVoxelsTo(ObjectMask objectSource, VoxelsUntyped destination, BoundingBox boxDestination)Copies the voxels into adestination, but only those voxels inside anObjectMask.voidVoxelsUntyped. copyVoxelsTo(BoundingBox boxSource, VoxelsUntyped destination, BoundingBox boxDestination)Copies the voxels into adestination, but only those voxels inside a bounding-box.voidVoxelsUntyped. replaceSlice(int sliceIndexToUpdate, VoxelsUntyped sourceVoxels, int sliceIndexSource, boolean duplicate)Copies one particular z-slice of voxels from a source into the current voxels. -
Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.convert
Methods in org.anchoranalysis.image.voxel.convert with parameters of type VoxelsUntyped Modifier and Type Method Description <S, T> Voxels<S>VoxelsConverterMulti. convert(VoxelsUntyped voxels, VoxelsFactoryTypeBound<T> outputVoxelsFactory)Converts aVoxelsto another type.Voxels<T>VoxelsConverter. convertFrom(VoxelsUntyped from, VoxelsFactoryTypeBound<T> factory)Creates a new voxels of typeTand copies the voxels fromfrom.voidVoxelsConverter. copyFrom(VoxelsUntyped from, Voxels<T> to)Copies voxels from a source (of any type) to voxels of typeT. -
Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.convert.imglib2
Methods in org.anchoranalysis.image.voxel.convert.imglib2 with parameters of type VoxelsUntyped Modifier and Type Method Description static net.imglib2.img.Img<? extends net.imglib2.type.numeric.RealType<?>>ConvertToImg. from(VoxelsUntyped voxels)Converts from aVoxelsUntyped(Anchor structure) to aImg(ImgLib2 structure).static net.imglib2.img.Img<? extends net.imglib2.type.numeric.RealType<?>>ConvertToImg. fromSlice(VoxelsUntyped voxels, int sliceIndex)Creates anImgfrom a single z-slice of aVoxelsUntyped. -
Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.factory
Methods in org.anchoranalysis.image.voxel.factory that return VoxelsUntyped Modifier and Type Method Description VoxelsUntypedVoxelsFactory. createEmpty(Extent extent, VoxelDataType dataType)Creates empty voxels to match a particular size.<T> VoxelsUntypedVoxelsFactory. createFrom(SliceBufferIndex<T> buffer, VoxelDataType dataType)Creates voxels from a particularSliceBufferIndexwith specified type. -
Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.resizer
Methods in org.anchoranalysis.image.voxel.resizer with parameters of type VoxelsUntyped Modifier and Type Method Description voidVoxelsResizer. resize(VoxelsUntyped source, VoxelsUntyped destination)Copies voxels slice-by-slice fromsourcetodestinationperforming necessary interpolation. -
Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.statistics
Methods in org.anchoranalysis.image.voxel.statistics with parameters of type VoxelsUntyped Modifier and Type Method Description static HistogramHistogramFactory. createFrom(VoxelsUntyped voxels)Creates aHistogramof the aggregated voxel intensities in aVoxelsUntyped. -
Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.thresholder
Methods in org.anchoranalysis.image.voxel.thresholder with parameters of type VoxelsUntyped Modifier and Type Method Description static BinaryVoxels<UnsignedByteBuffer>VoxelsThresholder. threshold(VoxelsUntyped voxels, float level, BinaryValuesByte binaryValues, Optional<ObjectMask> objectMask, boolean alwaysDuplicate)Applies thresholding toVoxelsUntyped.