Uses of Class
org.anchoranalysis.image.voxel.VoxelsUntyped

Packages that use VoxelsUntyped

Package	Description
org.anchoranalysis.image.voxel	Data-structures to store and manipulate image raster-data or voxels.
org.anchoranalysis.image.voxel.convert	Converting Voxels to different data-types.
org.anchoranalysis.image.voxel.convert.imglib2	Converts anchor data-structures to those used by ImgLib2.
org.anchoranalysis.image.voxel.factory	Creates new instances of Voxels and VoxelsUntyped with specific data-types.
org.anchoranalysis.image.voxel.resizer	Different interpolator methods to use when scaling voxels.
org.anchoranalysis.image.voxel.statistics	Statistics about aggregated voxel intensities.
org.anchoranalysis.image.voxel.thresholder	Thresholding operations on voxels.

Uses of VoxelsUntyped in org.anchoranalysis.image.voxel

Methods in org.anchoranalysis.image.voxel with parameters of type VoxelsUntyped

Modifier and Type	Method	Description
void	VoxelsUntyped.copyVoxelsTo(ObjectMask objectSource, VoxelsUntyped destination, BoundingBox boxDestination)	Copies the voxels into a destination, but only those voxels inside an ObjectMask.
void	VoxelsUntyped.copyVoxelsTo(BoundingBox boxSource, VoxelsUntyped destination, BoundingBox boxDestination)	Copies the voxels into a destination, but only those voxels inside a bounding-box.
void	VoxelsUntyped.replaceSlice(int sliceIndexToUpdate, VoxelsUntyped sourceVoxels, int sliceIndexSource, boolean duplicate)	Copies one particular z-slice of voxels from a source into the current voxels.

Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.convert

Methods in org.anchoranalysis.image.voxel.convert with parameters of type VoxelsUntyped

Modifier and Type	Method	Description
<S, T> Voxels<S>	VoxelsConverterMulti.convert(VoxelsUntyped voxels, VoxelsFactoryTypeBound<T> outputVoxelsFactory)	Converts a Voxels to another type.
Voxels<T>	VoxelsConverter.convertFrom(VoxelsUntyped from, VoxelsFactoryTypeBound<T> factory)	Creates a new voxels of type T and copies the voxels from from.
void	VoxelsConverter.copyFrom(VoxelsUntyped from, Voxels<T> to)	Copies voxels from a source (of any type) to voxels of type T.

Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.convert.imglib2

Methods in org.anchoranalysis.image.voxel.convert.imglib2 with parameters of type VoxelsUntyped

Modifier and Type	Method	Description
static net.imglib2.img.Img<? extends net.imglib2.type.numeric.RealType<?>>	ConvertToImg.from(VoxelsUntyped voxels)	Converts from a VoxelsUntyped (Anchor structure) to a Img (ImgLib2 structure).
static net.imglib2.img.Img<? extends net.imglib2.type.numeric.RealType<?>>	ConvertToImg.fromSlice(VoxelsUntyped voxels, int sliceIndex)	Creates an Img from a single z-slice of a VoxelsUntyped.

Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.factory

Methods in org.anchoranalysis.image.voxel.factory that return VoxelsUntyped

Modifier and Type	Method	Description
VoxelsUntyped	VoxelsFactory.createEmpty(Extent extent, VoxelDataType dataType)	Creates empty voxels to match a particular size.
<T> VoxelsUntyped	VoxelsFactory.createFrom(SliceBufferIndex<T> buffer, VoxelDataType dataType)	Creates voxels from a particular SliceBufferIndex with specified type.

Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.resizer

Methods in org.anchoranalysis.image.voxel.resizer with parameters of type VoxelsUntyped

Modifier and Type	Method	Description
void	VoxelsResizer.resize(VoxelsUntyped source, VoxelsUntyped destination)	Copies voxels slice-by-slice from source to destination performing necessary interpolation.

Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.statistics

Methods in org.anchoranalysis.image.voxel.statistics with parameters of type VoxelsUntyped

Modifier and Type	Method	Description
static Histogram	HistogramFactory.createFrom(VoxelsUntyped voxels)	Creates a Histogram of the aggregated voxel intensities in a VoxelsUntyped.

Uses of VoxelsUntyped in org.anchoranalysis.image.voxel.thresholder

Methods in org.anchoranalysis.image.voxel.thresholder with parameters of type VoxelsUntyped

Modifier and Type	Method	Description
static BinaryVoxels<UnsignedByteBuffer>	VoxelsThresholder.threshold(VoxelsUntyped voxels, float level, BinaryValuesByte binaryValues, Optional<ObjectMask> objectMask, boolean alwaysDuplicate)	Applies thresholding to VoxelsUntyped.