anchor-image-voxel 0.2.1 API
| Package | Description |
|---|---|
| org.anchoranalysis.image.voxel |
Data-structures to store and manipulate image raster-data or voxels.
|
| org.anchoranalysis.image.voxel.arithmetic |
Arithmetic operations for
Voxels. |
| org.anchoranalysis.image.voxel.assigner |
Assigns values to some or all voxels.
|
| org.anchoranalysis.image.voxel.binary |
The
BinaryVoxels class and related operations. |
| org.anchoranalysis.image.voxel.binary.connected | |
| org.anchoranalysis.image.voxel.binary.values |
Defining on and off intensity-values to interpret an image in a binary way.
|
| org.anchoranalysis.image.voxel.buffer |
A buffer of voxel-values, usually corresponding to a single z-slice in
Voxels. |
| org.anchoranalysis.image.voxel.buffer.primitive |
Conversion of both primitive data types and image structures between Anchor's data-structures and
other representations.
|
| org.anchoranalysis.image.voxel.buffer.slice |
A container with voxel-buffers for each z-slice.
|
| org.anchoranalysis.image.voxel.convert |
Converting
Voxels to different data-types. |
| org.anchoranalysis.image.voxel.convert.bufferedimage |
Converts anchor data-structures to the
BufferedImage used by Java's AWT. |
| org.anchoranalysis.image.voxel.convert.imglib2 |
Converts anchor data-structures to those used by ImgLib2.
|
| org.anchoranalysis.image.voxel.datatype |
The different data-types that can be used to represent voxels.
|
| org.anchoranalysis.image.voxel.extracter |
Methods to read/copy/duplicate portions of voxels.
|
| org.anchoranalysis.image.voxel.extracter.predicate |
Methods to find or count voxels that satisfy a predicate.
|
| org.anchoranalysis.image.voxel.factory |
Creates new instances of
Voxels and VoxelsUntyped with specific data-types. |
| org.anchoranalysis.image.voxel.iterator |
Utilities to iterate over voxel-locations in images and sub-regions of images.
|
| org.anchoranalysis.image.voxel.iterator.intersecting |
Like
org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over
the intersecting regions of two entities. |
| org.anchoranalysis.image.voxel.iterator.neighbor |
Iterating over a point's neighboring voxels.
|
| org.anchoranalysis.image.voxel.iterator.neighbor.kernel |
Routines for moving a
KernelPointCursor around the
neighboring voxels of the point. |
| org.anchoranalysis.image.voxel.iterator.predicate |
Functional-interfaces for processing different combinations of points and buffers that return a
boolean.
|
| org.anchoranalysis.image.voxel.iterator.process |
Functional-interfaces for processing different combinations of points and buffers that do not
return a value.
|
| org.anchoranalysis.image.voxel.iterator.process.buffer |
Functional-interfaces for processing different combinations of points and raw buffers, but not
VoxelBuffer. |
| org.anchoranalysis.image.voxel.iterator.process.voxelbuffer |
Functional-interfaces for processing different combinations of points and
VoxelBuffer but not raw buffers. |
| org.anchoranalysis.image.voxel.kernel |
Applying a kernel via
convolution to voxels.
|
| org.anchoranalysis.image.voxel.kernel.count |
Kernels to count the number of voxels that are equal to a particular value.
|
| org.anchoranalysis.image.voxel.kernel.morphological |
Kernels that apply morphological operations.
|
| org.anchoranalysis.image.voxel.kernel.outline |
Kernel to find outline voxels on an object.
|
| org.anchoranalysis.image.voxel.neighborhood |
A region in proximity to a voxel, encompassing this voxel as well as others.
|
| org.anchoranalysis.image.voxel.object |
The fundamental data class that is an
ObjectMask
and related structures. |
| org.anchoranalysis.image.voxel.object.morphological |
Morphological operations
applied to
ObjectMasks. |
| org.anchoranalysis.image.voxel.object.morphological.predicate |
Predicates to match certain voxels as used in
org.anchoranalysis.image.voxel.object.morphological. |
| org.anchoranalysis.image.voxel.projection |
Classes for calculating differnet kind of projections of voxel values across multiple buffers.
|
| org.anchoranalysis.image.voxel.projection.extrema |
Classes for performing both a Maximum Intensity
Projection and a minimum projection.
|
| org.anchoranalysis.image.voxel.resizer |
Different interpolator methods to use when scaling voxels.
|
| org.anchoranalysis.image.voxel.statistics |
Statistics about aggregated voxel intensities.
|
| org.anchoranalysis.image.voxel.thresholder |
Thresholding operations on voxels.
|