Package org.anchoranalysis.image.io.stack.output.generator

Class FlattenStackGenerator

Object

org.anchoranalysis.image.io.stack.output.generator.RasterGenerator<T>

org.anchoranalysis.image.io.stack.output.generator.RasterGeneratorSelectFormat<T>

org.anchoranalysis.image.io.stack.output.generator.RasterGeneratorDelegateToRaster<Stack,Stack>

org.anchoranalysis.image.io.stack.output.generator.FlattenStackGenerator

All Implemented Interfaces:

Generator<Stack>, TransformingGenerator<Stack,Stack>, ElementWriter<Stack>

public class FlattenStackGenerator
extends RasterGeneratorDelegateToRaster<Stack,Stack>

Like a StackGenerator but first applies a maximum-intensity-projection.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
FlattenStackGenerator(boolean padIfNecessary)	Creates with possible padding.

Method Summary

Modifier and Type	Method	Description
protected Stack	convertBeforeAssign(Stack element)	Converts an element before setting it on the delegate.
protected Stack	convertBeforeTransform(Stack stack)	Converts an element before calling RasterGeneratorDelegateToRaster.transform(T) on the delegate.
StackWriteAttributes	guaranteedImageAttributes()	Guarantees on the attributes of all images created by the generator.

Methods inherited from class org.anchoranalysis.image.io.stack.output.generator.RasterGeneratorDelegateToRaster

getDelegate, transform

Methods inherited from class org.anchoranalysis.image.io.stack.output.generator.RasterGeneratorSelectFormat

selectFileExtension, writeToFile

Methods inherited from class org.anchoranalysis.image.io.stack.output.generator.RasterGenerator

write, writeWithIndex

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FlattenStackGenerator

public FlattenStackGenerator(boolean padIfNecessary)

Creates with possible padding.

Parameters:

padIfNecessary - iff true, in the specific case of a 2-channel stack, an additional blank channel is added to make it 3-channels.

Method Details

guaranteedImageAttributes

public StackWriteAttributes guaranteedImageAttributes()

Description copied from class: RasterGenerator

Guarantees on the attributes of all images created by the generator.

Overrides:

guaranteedImageAttributes in class RasterGeneratorDelegateToRaster<Stack,Stack>

Returns:

options that are guaranteed to be true of all images by the generator.

convertBeforeAssign

protected Stack convertBeforeAssign(Stack element) throws OperationFailedException

Description copied from class: RasterGeneratorDelegateToRaster

Converts an element before setting it on the delegate.

Specified by:

convertBeforeAssign in class RasterGeneratorDelegateToRaster<Stack,Stack>

Parameters:

element - element to convert

Returns:

converted element

Throws:

OperationFailedException - if anything goes wrong during conversion

convertBeforeTransform

protected Stack convertBeforeTransform(Stack stack)

Description copied from class: RasterGeneratorDelegateToRaster

Converts an element before calling RasterGeneratorDelegateToRaster.transform(T) on the delegate.

Specified by:

convertBeforeTransform in class RasterGeneratorDelegateToRaster<Stack,Stack>

Parameters:

stack - stack to convert

Returns:

converted element