Package org.anchoranalysis.image.io.stack.output.box

Class ScaleableBackground

Object

org.anchoranalysis.image.io.stack.output.box.ScaleableBackground

public class ScaleableBackground
extends Object

A stack that can be used as a background (and maybe scaled).

In situations, where only particular regions of a large stack (or large after upscaling) are desired, this provides a more efficient lazy interpolation strategy (just for the needed regions) rather than eagerly interpolating the entire background.

It is always flattened via a maximum intensity projection.

Author:

Owen Feehan

Method Summary

Modifier and Type	Method	Description
Stack	extractRegionFromStack(org.anchoranalysis.spatial.box.BoundingBox box)	Extracts a portion of a stack (flattened and maybe scaled) corresponding to a bounding-box
int	getNumberChannels()	Number of channels in the background.
boolean	isRGB()	Does the display-stack contain an RGB image?
static ScaleableBackground	noScaling(DisplayStack stack)	Creates a background from a stack without any scaling.
static ScaleableBackground	scaleBy(DisplayStack stack, org.anchoranalysis.spatial.scale.ScaleFactor scaleFactor, org.anchoranalysis.image.voxel.resizer.VoxelsResizer resizer)	Creates a background from a stack with scaling.
org.anchoranalysis.spatial.box.Extent	sizeAfterAnyScaling()	The size of the background after any scaling has occurred.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

noScaling

public static ScaleableBackground noScaling(DisplayStack stack)

Creates a background from a stack without any scaling.

Parameters:

stack - the stack

Returns:

a newly created class

scaleBy

public static ScaleableBackground scaleBy(DisplayStack stack, org.anchoranalysis.spatial.scale.ScaleFactor scaleFactor, org.anchoranalysis.image.voxel.resizer.VoxelsResizer resizer)

Creates a background from a stack with scaling.

Parameters:

stack - the stack.

scaleFactor - what to scale the stack by.

resizer - an interpolator for resizing voxels.

Returns:

a newly created ScaleableBackground.

getNumberChannels

public int getNumberChannels()

Number of channels in the background.

Returns:

number of channels.

extractRegionFromStack

public Stack extractRegionFromStack(org.anchoranalysis.spatial.box.BoundingBox box) throws OperationFailedException

Extracts a portion of a stack (flattened and maybe scaled) corresponding to a bounding-box

Parameters:

box - bounding-box representing the region.

Returns:

a stack showing only the bounding-box region.

Throws:

OperationFailedException - if the operation cannot complete successfully.

sizeAfterAnyScaling

public org.anchoranalysis.spatial.box.Extent sizeAfterAnyScaling()

The size of the background after any scaling has occurred.

Returns:

the size.

isRGB

public boolean isRGB()

Does the display-stack contain an RGB image?

Returns:

true if the contained image is RGB, false if it is grayscale.