Package org.anchoranalysis.image.io.stack

Class ConvertStackToRGB

Object

org.anchoranalysis.image.io.stack.ConvertStackToRGB

public class ConvertStackToRGB
extends Object

Converts a Stack or DisplayStack to a RGBStack.

Author:

Owen Feehan

Method Summary

Modifier and Type	Method	Description
static RGBStack	convert(DisplayStack stack, boolean alwaysNew)	Converts all of a DisplayStack to a RGBStack.
static RGBStack	convert(Stack stack, StackDisplayer displayer, boolean alwaysNew)	Converts all of a DisplayStack to a RGBStack.
static RGBStack	convertCropped(DisplayStack stack, org.anchoranalysis.spatial.box.BoundingBox box)	Converts a bounding-box region in DisplayStack to a RGBStack.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

convert

public static RGBStack convert(Stack stack, StackDisplayer displayer, boolean alwaysNew) throws CreateException

Converts all of a DisplayStack to a RGBStack.

Parameters:

stack - the stack to convert.

displayer - how to convert stack to be displayed.

alwaysNew - when true, new channels are always created. when false, they are only created if needed (e.g. if the voxel-data type is not already 8-bit).

Returns:

a newly created RGBStack with exactly three channels, and intensity-values converted to 8-bit.

Throws:

CreateException - cannot successfuly convert Stack to a DisplayStack (as an intermediate step).

convert

public static RGBStack convert(DisplayStack stack, boolean alwaysNew)

Converts all of a DisplayStack to a RGBStack.

Parameters:

stack - the stack to convert.

alwaysNew - when true, new channels are always created. when false, they are only created if needed (e.g. if the voxel-data type is not already 8-bit).

Returns:

a newly created RGBStack with identical voxels and size as stack.

convertCropped

public static RGBStack convertCropped(DisplayStack stack, org.anchoranalysis.spatial.box.BoundingBox box)

Converts a bounding-box region in DisplayStack to a RGBStack.

Parameters:

stack - the stack, from which a portion is to be converted.

box - the region in stack which is converted.

Returns:

a newly created RGBStack with identical voxels and size as stack.