Package org.anchoranalysis.image.io.object.output.rgb

Class DrawCroppedObjectsGenerator

Object

org.anchoranalysis.image.io.stack.output.generator.RasterGenerator<T>

org.anchoranalysis.image.io.stack.output.generator.RasterGeneratorSelectFormat<ObjectCollectionWithProperties>

org.anchoranalysis.image.io.object.output.rgb.ObjectsAsRGBGenerator

org.anchoranalysis.image.io.object.output.rgb.DrawCroppedObjectsGenerator

All Implemented Interfaces:

Generator<ObjectCollectionWithProperties>, TransformingGenerator<ObjectCollectionWithProperties,Stack>, ElementWriter<ObjectCollectionWithProperties>

public class DrawCroppedObjectsGenerator
extends ObjectsAsRGBGenerator

Similar to DrawObjectsGenerator, but with the background stack cropped to focus only on the region containing objects.

Padding is also placed around the objects.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
DrawCroppedObjectsGenerator(DrawObject drawObject, DisplayStack background, Padding padding, ColorIndex colors)	Create with a particular background and method for drawing-objects.

Method Summary

Modifier and Type	Method	Description
protected RGBStack	generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)	Creates a RGBStack containing the background, without objects being drawn upon it.
protected ObjectCollectionWithProperties	generateMasks(ObjectCollectionWithProperties objects)	Creates a ObjectCollectionWithProperties indicative of the masks that will be imposed on top of the background-region.

Methods inherited from class org.anchoranalysis.image.io.object.output.rgb.ObjectsAsRGBGenerator

createEmptyStackFor, getBackground, guaranteedImageAttributes, setBackground, transform

Methods inherited from class org.anchoranalysis.image.io.stack.output.generator.RasterGeneratorSelectFormat

selectFileExtension, writeToFile

Methods inherited from class org.anchoranalysis.image.io.stack.output.generator.RasterGenerator

write, writeWithIndex

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DrawCroppedObjectsGenerator

public DrawCroppedObjectsGenerator(DrawObject drawObject, DisplayStack background, Padding padding, ColorIndex colors)

Create with a particular background and method for drawing-objects.

Parameters:

drawObject - method for drawing an object on an image.

background - the background image, on which objects are drawn.

padding - padding used to add a margin around the objects in the cropped area.

colors - the colors to use for objects, indexed by a particular identifier.

Method Details

generateBackgroundRegion

protected RGBStack generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background) throws CreateException

Description copied from class: ObjectsAsRGBGenerator

Creates a RGBStack containing the background, without objects being drawn upon it.

This background may be all or only a region of the entire background-stack.

Specified by:

generateBackgroundRegion in class ObjectsAsRGBGenerator

Parameters:

objects - the current objects to be drawn.

background - the entire background.

Returns:

a newly created RGBStack, as above.

Throws:

CreateException - if the background cannot be successfully created.

generateMasks

protected ObjectCollectionWithProperties generateMasks(ObjectCollectionWithProperties objects) throws CreateException

Description copied from class: ObjectsAsRGBGenerator

Creates a ObjectCollectionWithProperties indicative of the masks that will be imposed on top of the background-region.

Specified by:

generateMasks in class ObjectsAsRGBGenerator

Parameters:

objects - the objects to draw.

Returns:

either objects or a derived-representation of objects, as will be drawn on the background-region.

Throws:

CreateException - if the background cannot be successfully created.