Package org.anchoranalysis.image.io.bean.stack.writer

Class StackWriter

Object

org.anchoranalysis.bean.AnchorBean<StackWriter>

org.anchoranalysis.image.io.bean.stack.writer.StackWriter

Direct Known Subclasses:

OneOrThreeChannelsWriter

public abstract class StackWriter
extends AnchorBean<StackWriter>

Writes a stack (i.e. raster) to the filesystem.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
StackWriter()

Method Summary

Modifier and Type	Method	Description
abstract ImageFileFormat	fileFormat(StackWriteOptions writeOptions)	The file format that will be written by the generator.
ImageFileFormat	fileFormatWarnUnexpected(StackWriteOptions writeOptions, Optional<Logger> logger)	The file format that will be written by the generator, warning with a log message if different to suggestion.
abstract void	writeStack(Stack stack, Path filePath, StackWriteOptions options)	Writes a stack to the filesystem at a particular path.
Path	writeStackWithExtension(Stack stack, Path filePath, StackWriteOptions options)	Writes a stack to the filesystem at a particular path with an extension appended to the path.

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

StackWriter

public StackWriter()

Method Details

writeStackWithExtension

public Path writeStackWithExtension(Stack stack, Path filePath, StackWriteOptions options) throws ImageIOException

Writes a stack to the filesystem at a particular path with an extension appended to the path.

Parameters:

stack - the stack to write.

filePath - the path to write the file to, apart from an extension.

options - options which may influence how a raster is written.

Returns:

the full path (including extension) used for writing.

Throws:

ImageIOException - if anything goes wrong while writing.

fileFormatWarnUnexpected

public ImageFileFormat fileFormatWarnUnexpected(StackWriteOptions writeOptions, Optional<Logger> logger) throws ImageIOException

The file format that will be written by the generator, warning with a log message if different to suggestion.

Parameters:

writeOptions - options which may influence how a raster is written.

logger - the logger to use for the warning message.

Returns:

the image file-format.

Throws:

ImageIOException - if unable to successfully determine the file-format to use to write.

fileFormat

public abstract ImageFileFormat fileFormat(StackWriteOptions writeOptions) throws ImageIOException

The file format that will be written by the generator.

Parameters:

writeOptions - options which may influence how a raster is written.

Returns:

the image file-format.

Throws:

ImageIOException - if unable to successfully determine the file-format to use to write.

writeStack

public abstract void writeStack(Stack stack, Path filePath, StackWriteOptions options) throws ImageIOException

Writes a stack to the filesystem at a particular path.

Parameters:

stack - the stack to write.

filePath - the path to write the file to.

options - options which may influence how a raster is written.

Throws:

ImageIOException - if anything goes wrong while writing.