All Classes and Interfaces
Class
Description
Align the bounding-box to the
larger without resizing.How the alignment will occur for a particular dimension.
Area expressed in square meters, or units thereof.
Area expressed in pixels.
Creates a stack that combines other stacks.
When the position of a particular
RGBStack cannot be determined, when combined with
others onto a single plane.Creates a
DirectionVector that is a unit-vector along a particular image-axis.A provider base-class that as well as providing type
S, also provides a Stack.Selects voxels that are not off voxels.
Selects voxels that are not on voxels.
Selects only the off voxels.
Selects only the on pixels.
Performs a segmentation on voxels so that each voxel has an on or off state after
the operation.
Parameters that are passed during a
BinarySegmentation.Uses an existing
BinarySegmentation that is located by a unique identifier.Implementation of
BinarySegmentation that performs global
thresholding.An implementation of
BinarySegmentation that delegates to one other BinarySegmentation.A base class for implementations of
RelationToThreshold where the threshold is derived
from a BinaryValuesInt.Describes a
BoundingBox that is optionally enclosed by a larger containing BoundingBox to given padding.Aligns a smaller
BoundingBox to fit inside a larger BoundingBox.Calculates a threshold-level from a histogram.
Implementation of
CalculateLevel that calls a single delegate CalculateLevel.Indicates how to arrange one or more
RGBStacks in a cell in a table.A method of aggregating the voxels from many identically-sized
Channels into one.Implementation of
ChannelProvider that calls two ChannelProviders that
must provide Channels of the same dimensions.Implementation of
ChannelProvider that calls three ChannelProviders that
must provide Channels of the same dimensions.Implementation of
ChannelProvider that calls a single delegate ChannelProvider.Checks that all
Channels have the same voxel-data-type.Creates a
ChannelConverter for converting a channel to a particular type.Creates a
ChannelConverterAttached<Histogram, T> for converting a channel to a particular
type, making use of a Histogram.Base class for beans that implement
Provider to provide Dimensions.A bean that creates a
DirectionVector.Implementation of
UnitValueDistance that specifies a value in physical units, as
described by particular recognized strings.Implementation of
UnitValueDistance that specifies a value in voxels, ignoring any
physical image resolution.A particular
Extent to be arranged, with calculated aspect-ratio, and its unique index
position.Montages
Extents together to completely fill the available space, while preserving aspect
ratio.Scales the size of images to match the target image, preserving aspect-ratio.
Grow the bounding-box to fill
larger as much as possible.Implementation of
HistogramProvider that calls a single delegate HistogramProvider.A bean that must be initialized with
ImageInitialization before usage.The state used to initialize a
ImageBean.Resizes with an interpolator that uses Lanczos resampling as implemented in
Imglib2.
Resizes with an interpolator that uses linear interpolation as implemented
in Imglib2.
Implementation of
StackDisplayer that converts to unsigned-8bit by taking the upper and
lower quantiles of the intensity range.Defines a particular type of interpolation method that can be used for resizing images.
Implementation of
MaskProvider that calls a single delegate MaskProvider.An implementation of
Interpolator that performs no interpolation.Base class for beans that implement
Provider to provide an ObjectCollection.Implementation of
ObjectCollectionProvider that calls a single delegate
Provider<ObjectCollection>.Base class for filtering an
ObjectCollection to remove objects according to a criteria.Matches an object with other objects.
Overlays one image on the other.
Padding (whitespace of certain extent) placed around an object in XY direction and in Z
direction.
Helps populates a
NamedProviderStore from the contents of a Define.The choices of text that may describe the position of an entity along a particular axis.
A constant set of text strings used to indicate particular choices.
Calculating a scaling-factor from dimensions.
Performs some kind of segmentation on an image.
When a segmentation cannot successfully complete.
A base class for algorithms to segment a channel into one or more objects.
Implementation of
SegmentChannelIntoObjects that calls a single delegate SegmentChannelIntoObjects.A single
Stack arranged as-is.The size of an entity in the X and Y dimensions.
Specifies each axis-component of a vector in a particular direction.
A list of
BoundingBoxes that indicate where to locate corresponding Stacks on a
unified larger image.Base class for a method that determines positions for
RGBStacks when combined onto a
single plane.Implementation of
StackProvider that calls a single delegate Provider<Stack>.Thresholds voxels to create a binary-voxels using global
thresholding.
Performs global thresholding.
A higher-level aggregate structure that arranges other
StackArrangers in a tabular
pattern.A base class for a value that describes an area measurement on the image.
Base class for methods to specify a distance along a vector in an image.
When a failure occurs converting from one type of units to another.
A base class for a value that describes an area or volume measurement, which can then be
resolved to a number of voxels.
A base class for a value that describes a volume measurement on the image.
Volume expressed in cubic meters, or units thereof.
Volume expressed in voxels.