Package org.anchoranalysis.image.bean.spatial.arrange

Class StackArranger

Object

org.anchoranalysis.bean.AnchorBean<StackArranger>

org.anchoranalysis.image.bean.spatial.arrange.StackArranger

Direct Known Subclasses:

Fill, Overlay, Single, Tile

public abstract class StackArranger
extends AnchorBean<StackArranger>

Base class for a method that determines positions for RGBStacks when combined onto a single plane.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
StackArranger()

Method Summary

Modifier and Type	Method	Description
abstract StackArrangement	arrangeStacks(Iterator<org.anchoranalysis.spatial.box.Extent> extents, OperationContext context)	Arranges stacks to that they fit together in a single raster.
RGBStack	combine(List<RGBStack> stacks, org.anchoranalysis.image.voxel.resizer.VoxelsResizer resizer, OperationContext context)	Creates a new RGBStack of voxel data type unsigned byte that is a combination of other RGBStacks.
RGBStack	combine(List<RGBStack> stacks, org.anchoranalysis.image.voxel.resizer.VoxelsResizer resizer, ChannelFactorySingleType factory, OperationContext context)	Creates a new RGBStack that is a combination of other RGBStacks.

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

StackArranger

public StackArranger()

Method Details

combine

public RGBStack combine(List<RGBStack> stacks, org.anchoranalysis.image.voxel.resizer.VoxelsResizer resizer, OperationContext context) throws ArrangeStackException

Creates a new RGBStack of voxel data type unsigned byte that is a combination of other RGBStacks.

Parameters:

stacks - the images that will be combined.

resizer - resizes an image, if it doesn't match the bounding-box size for the copy operation.

context - objects for the operation.

Returns:

a newly created RGBStack with all stacks copied into it.

Throws:

ArrangeStackException - if there are more stacks than can be arranged, or otherwise an error occurs arranging them.

combine

public RGBStack combine(List<RGBStack> stacks, org.anchoranalysis.image.voxel.resizer.VoxelsResizer resizer, ChannelFactorySingleType factory, OperationContext context) throws ArrangeStackException

Creates a new RGBStack that is a combination of other RGBStacks.

Parameters:

stacks - the images that will be combined.

resizer - resizes an image, if it doesn't match the bounding-box size for the copy operation.

factory - the factory used to create the new RGBStack.

context - objects for the operation.

Returns:

a newly created RGBStack with all stacks copied into it.

Throws:

ArrangeStackException - if there are more stacks than can be arranged, or otherwise an error occurs arranging them.

arrangeStacks

public abstract StackArrangement arrangeStacks(Iterator<org.anchoranalysis.spatial.box.Extent> extents, OperationContext context) throws ArrangeStackException

Arranges stacks to that they fit together in a single raster.

Parameters:

extents - the size of each respective stack for the arrangement.

context - objects for the operation.

Returns:

bounding-boxes for each respective RGBStack in the unified plane.

Throws:

ArrangeStackException - if a bounding-box cannot be determined for any stack.