Package org.anchoranalysis.image.bean.segment.object

Class SegmentChannelIntoObjectsUnary

Object

org.anchoranalysis.bean.AnchorBean<B>

org.anchoranalysis.bean.initializable.InitializableBean<T,ImageInitialization>

org.anchoranalysis.image.bean.ImageBean<T>

org.anchoranalysis.image.bean.segment.SegmentationBean<SegmentChannelIntoObjects>

org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjects

org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjectsUnary

public abstract class SegmentChannelIntoObjectsUnary
extends SegmentChannelIntoObjects

Implementation of SegmentChannelIntoObjects that calls a single delegate SegmentChannelIntoObjects.

Author:

Owen Feehan

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	SegmentChannelIntoObjectsUnary()

Method Summary

Modifier and Type	Method	Description
SegmentChannelIntoObjects	getSegment()	The delegate SegmentChannelIntoObjects that is called.
org.anchoranalysis.image.voxel.object.ObjectCollection	segment(Channel channel, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask, Optional<org.anchoranalysis.image.voxel.object.ObjectCollection> seeds)	Segments a channel to produce an object-collection.
protected abstract org.anchoranalysis.image.voxel.object.ObjectCollection	segment(Channel channel, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> object, Optional<org.anchoranalysis.image.voxel.object.ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)	Creates an ObjectCollection given the segmentation-results provided by the delegate.
void	setSegment(SegmentChannelIntoObjects segment)	The delegate SegmentChannelIntoObjects that is called.

Methods inherited from class org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjects

checkUnsupported3D, checkUnsupportedObjectMask, checkUnsupportedSeeds

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

SegmentChannelIntoObjectsUnary

protected SegmentChannelIntoObjectsUnary()

Method Details

segment

public org.anchoranalysis.image.voxel.object.ObjectCollection segment(Channel channel, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask, Optional<org.anchoranalysis.image.voxel.object.ObjectCollection> seeds) throws SegmentationFailedException

Description copied from class: SegmentChannelIntoObjects

Segments a channel to produce an object-collection.

Specified by:

segment in class SegmentChannelIntoObjects

Parameters:

channel - the channel to segment

objectMask - an object-mask that can restrict which areas of the channel are considered.

seeds - seeds that can be used to determine starting-points for segmentation regions.

Returns:

a newly created collection of objects for each segment. The created objects will always exist inside the channel's extent.

Throws:

SegmentationFailedException - if anything goes wrong during the segmentation.

segment

protected abstract org.anchoranalysis.image.voxel.object.ObjectCollection segment(Channel channel, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> object, Optional<org.anchoranalysis.image.voxel.object.ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter) throws SegmentationFailedException

Creates an ObjectCollection given the segmentation-results provided by the delegate.

Parameters:

channel - the channel as passed to segment(Channel, Optional, Optional).

object - the object-mask as passed to segment(Channel, Optional, Optional).

seeds - the seeds as passed to segment(Channel, Optional, Optional).

upstreamSegmenter - the delegate segmenter.

Returns:

the created ObjectCollection that is returned by the segmentation.

Throws:

SegmentationFailedException - if segmentation cannot complete successfully.

getSegment

public SegmentChannelIntoObjects getSegment()

The delegate SegmentChannelIntoObjects that is called.

setSegment

public void setSegment(SegmentChannelIntoObjects segment)

The delegate SegmentChannelIntoObjects that is called.