Package org.anchoranalysis.image.bean.segment.binary

Class BinarySegmentationThreshold

Object

org.anchoranalysis.bean.AnchorBean<B>

org.anchoranalysis.bean.initializable.InitializableBean<T,ImageInitialization>

org.anchoranalysis.image.bean.ImageBean<T>

org.anchoranalysis.image.bean.segment.SegmentationBean<BinarySegmentation>

org.anchoranalysis.image.bean.segment.binary.BinarySegmentation

org.anchoranalysis.image.bean.segment.binary.BinarySegmentationThreshold

public class BinarySegmentationThreshold
extends BinarySegmentation

Implementation of BinarySegmentation that performs global thresholding.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
BinarySegmentationThreshold()

Method Summary

Modifier and Type	Method	Description
Thresholder	getThresholder()	Performs the global thresholding.
org.anchoranalysis.image.voxel.binary.BinaryVoxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer>	segment(org.anchoranalysis.image.voxel.VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask)	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.
void	setThresholder(Thresholder thresholder)	Performs the global thresholding.

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BinarySegmentationThreshold

public BinarySegmentationThreshold()

Method Details

segment

public org.anchoranalysis.image.voxel.binary.BinaryVoxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer> segment(org.anchoranalysis.image.voxel.VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask) throws SegmentationFailedException

Description copied from class: BinarySegmentation

Performs a segmentation on voxels so that each voxel has an on or off state after the operation.

Specified by:

segment in class BinarySegmentation

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

objectMask - if present, segmentation only occurs inside this object.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.

getThresholder

public Thresholder getThresholder()

Performs the global thresholding.

setThresholder

public void setThresholder(Thresholder thresholder)

Performs the global thresholding.