Package org.anchoranalysis.image.bean.segment.binary

Class BinarySegmentation

Object

org.anchoranalysis.bean.AnchorBean<B>

org.anchoranalysis.bean.initializable.InitializableBean<T,ImageInitialization>

org.anchoranalysis.image.bean.ImageBean<T>

org.anchoranalysis.image.bean.segment.SegmentationBean<BinarySegmentation>

org.anchoranalysis.image.bean.segment.binary.BinarySegmentation

Direct Known Subclasses:

BinarySegmentationReference, BinarySegmentationThreshold, BinarySegmentationUnary

public abstract class BinarySegmentation
extends SegmentationBean<BinarySegmentation>

Performs a segmentation on voxels so that each voxel has an on or off state after the operation.

Author:

Owen Feehan

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	BinarySegmentation()

Method Summary

Modifier and Type	Method	Description
abstract org.anchoranalysis.image.voxel.binary.BinaryVoxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer>	segment(org.anchoranalysis.image.voxel.VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask)	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BinarySegmentation

protected BinarySegmentation()

Method Details

segment

public abstract org.anchoranalysis.image.voxel.binary.BinaryVoxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer> segment(org.anchoranalysis.image.voxel.VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask) throws SegmentationFailedException

Performs a segmentation on voxels so that each voxel has an on or off state after the operation.

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

objectMask - if present, segmentation only occurs inside this object.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.