Uses of Class pl.poznan.put.torsion.TorsionAngleValue (BioCommons 3.0.4 API)

Packages that use TorsionAngleValue
Package	Description
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.
pl.poznan.put.rna
pl.poznan.put.torsion	Contains classes dealing with torsion angles handling.

Uses of TorsionAngleValue in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return types with arguments of type TorsionAngleValue
Modifier and Type	Method	Description
`protected List<TorsionAngleValue>`	ImmutableResidueTorsionAngles.`values()`
`protected abstract List<TorsionAngleValue>`	ResidueTorsionAngles.`values()`

Methods in pl.poznan.put.pdb.analysis with parameters of type TorsionAngleValue
Modifier and Type	Method	Description
`ImmutableResidueTorsionAngles.Builder`	ImmutableResidueTorsionAngles.Builder.`addValues(TorsionAngleValue element)`	Adds one element to `values` list.
`ImmutableResidueTorsionAngles.Builder`	ImmutableResidueTorsionAngles.Builder.`addValues(TorsionAngleValue... elements)`	Adds elements to `values` list.
`ImmutableResidueTorsionAngles`	ImmutableResidueTorsionAngles.`withValues(TorsionAngleValue... elements)`	Copy the current immutable object with elements that replace the content of `values`.

Method parameters in pl.poznan.put.pdb.analysis with type arguments of type TorsionAngleValue
Modifier and Type	Method	Description
`ImmutableResidueTorsionAngles.Builder`	ImmutableResidueTorsionAngles.Builder.`addAllValues(Iterable<? extends TorsionAngleValue> elements)`	Adds elements to `values` list.
`static ImmutableResidueTorsionAngles`	ImmutableResidueTorsionAngles.`of(PdbResidueIdentifier identifier, Iterable<? extends TorsionAngleValue> values)`	Construct a new immutable `ResidueTorsionAngles` instance.
`static ImmutableResidueTorsionAngles`	ImmutableResidueTorsionAngles.`of(PdbResidueIdentifier identifier, List<TorsionAngleValue> values)`	Construct a new immutable `ResidueTorsionAngles` instance.
`ImmutableResidueTorsionAngles.Builder`	ImmutableResidueTorsionAngles.Builder.`values(Iterable<? extends TorsionAngleValue> elements)`	Sets or replaces all elements for `values` list.
`ImmutableResidueTorsionAngles`	ImmutableResidueTorsionAngles.`withValues(Iterable<? extends TorsionAngleValue> elements)`	Copy the current immutable object with elements that replace the content of `values`.

Uses of TorsionAngleValue in pl.poznan.put.rna

Methods in pl.poznan.put.rna that return TorsionAngleValue
Modifier and Type	Method	Description
`TorsionAngleValue`	PseudophasePuckerType.`calculate(List<PdbResidue> residues, int currentIndex)`	Calculates the value of pseudophase pucker according to the formula in Saenger's "Principles of ...".

Uses of TorsionAngleValue in pl.poznan.put.torsion

Subclasses of TorsionAngleValue in pl.poznan.put.torsion
Modifier and Type	Class	Description
`class`	`ImmutableTorsionAngleValue`	Immutable implementation of `TorsionAngleValue`.

Methods in pl.poznan.put.torsion that return TorsionAngleValue
Modifier and Type	Method	Description
`default TorsionAngleValue`	AtomBasedTorsionAngleType.`calculate(List<PdbResidue> residues, int currentIndex)`	Calculates the value of this torsion angle (see `Angle.torsionAngle(Vector3D, Vector3D, Vector3D, Vector3D)`).
`default TorsionAngleValue`	AtomBasedTorsionAngleType.`calculate(PdbAtomLine a1, PdbAtomLine a2, PdbAtomLine a3, PdbAtomLine a4)`	Calculates a value of this torsion angle type given atoms explicitly.
`TorsionAngleValue`	AverageTorsionAngleType.`calculate(Collection<TorsionAngleValue> values)`	Calculates the average torsion angle value by collecting basic angle values and creating an `AngleSample` out of them to get the mean direction.
`TorsionAngleValue`	AverageTorsionAngleType.`calculate(List<PdbResidue> residues, int currentIndex)`	Calculates the average torsion angle value by calculating basic angle values and creating an `AngleSample` out of them to get the mean direction.
`TorsionAngleValue`	TorsionAngleType.`calculate(List<PdbResidue> residues, int currentIndex)`	Calculates the value of this torsion angle.

Methods in pl.poznan.put.torsion with parameters of type TorsionAngleValue
Modifier and Type	Method	Description
`static ImmutableTorsionAngleValue`	ImmutableTorsionAngleValue.`copyOf(TorsionAngleValue instance)`	Creates an immutable copy of a `TorsionAngleValue` value.
`ImmutableTorsionAngleValue.Builder`	ImmutableTorsionAngleValue.Builder.`from(TorsionAngleValue instance)`	Fill a builder with attribute values from the provided `TorsionAngleValue` instance.

Method parameters in pl.poznan.put.torsion with type arguments of type TorsionAngleValue
Modifier and Type	Method	Description
`TorsionAngleValue`	AverageTorsionAngleType.`calculate(Collection<TorsionAngleValue> values)`	Calculates the average torsion angle value by collecting basic angle values and creating an `AngleSample` out of them to get the mean direction.