Uses of Interface
pl.poznan.put.torsion.MasterTorsionAngleType

Packages that use MasterTorsionAngleType

Package	Description
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.
pl.poznan.put.protein
pl.poznan.put.rna
pl.poznan.put.torsion	Contains classes dealing with torsion angles handling.

Uses of MasterTorsionAngleType in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return types with arguments of type MasterTorsionAngleType

Modifier and Type	Method	Description
List<MasterTorsionAngleType>	MoleculeType.allAngleTypes()	Generates a list of all atom-based torsion angle types for this molecule type.
List<MasterTorsionAngleType>	MoleculeType.mainAngleTypes()	Generates a list of main atom-based torsion angle types for this molecule type.

Methods in pl.poznan.put.pdb.analysis with parameters of type MasterTorsionAngleType

Modifier and Type	Method	Description
Angle	ResidueTorsionAngles.value(MasterTorsionAngleType masterType)	Finds the value of a master torsion angle type in this collection.

Uses of MasterTorsionAngleType in pl.poznan.put.protein

Classes in pl.poznan.put.protein that implement MasterTorsionAngleType

Modifier and Type	Class	Description
class	AminoAcidTorsionAngle	A torsion angle defined for proteins.

Uses of MasterTorsionAngleType in pl.poznan.put.rna

Classes in pl.poznan.put.rna that implement MasterTorsionAngleType

Modifier and Type	Class	Description
class	NucleotideTorsionAngle	A torsion angle defined in a nucleotide.

Uses of MasterTorsionAngleType in pl.poznan.put.torsion

Classes in pl.poznan.put.torsion that implement MasterTorsionAngleType

Modifier and Type	Class	Description
class	AverageTorsionAngleType	An average of one or more basic angle types.
class	ImmutableAverageTorsionAngleType	Immutable implementation of AverageTorsionAngleType.

Methods in pl.poznan.put.torsion that return MasterTorsionAngleType

Modifier and Type	Method	Description
MasterTorsionAngleType	ImmutableTorsionAngleDelta.angleType()
abstract MasterTorsionAngleType	TorsionAngleDelta.angleType()

Methods in pl.poznan.put.torsion that return types with arguments of type MasterTorsionAngleType

Modifier and Type	Method	Description
abstract List<MasterTorsionAngleType>	AverageTorsionAngleType.consideredAngles()
List<MasterTorsionAngleType>	ImmutableAverageTorsionAngleType.consideredAngles()

Methods in pl.poznan.put.torsion with parameters of type MasterTorsionAngleType

Modifier and Type	Method	Description
ImmutableAverageTorsionAngleType.Builder	ImmutableAverageTorsionAngleType.Builder.addConsideredAngles(MasterTorsionAngleType element)	Adds one element to consideredAngles list.
ImmutableAverageTorsionAngleType.Builder	ImmutableAverageTorsionAngleType.Builder.addConsideredAngles(MasterTorsionAngleType... elements)	Adds elements to consideredAngles list.
ImmutableTorsionAngleDelta.Builder	ImmutableTorsionAngleDelta.Builder.angleType(MasterTorsionAngleType angleType)	Initializes the value for the angleType attribute.
static TorsionAngleDelta	TorsionAngleDelta.bothInvalidInstance(MasterTorsionAngleType masterType)	Creates an instance of torsion angle delta, where both input angles were invalid.
static ImmutableTorsionAngleDelta	ImmutableTorsionAngleDelta.of(MasterTorsionAngleType angleType, TorsionAngleDelta.State state, Angle delta, RangeDifference rangeDifference)	Construct a new immutable TorsionAngleDelta instance.
static TorsionAngleDelta	TorsionAngleDelta.subtractTorsionAngleValues(MasterTorsionAngleType masterType, Angle target, Angle model)	Subtracts torsion angle values and creates an instance of this class.
ImmutableTorsionAngleDelta	ImmutableTorsionAngleDelta.withAngleType(MasterTorsionAngleType value)	Copy the current immutable object by setting a value for the angleType attribute.
ImmutableAverageTorsionAngleType	ImmutableAverageTorsionAngleType.withConsideredAngles(MasterTorsionAngleType... elements)	Copy the current immutable object with elements that replace the content of consideredAngles.

Method parameters in pl.poznan.put.torsion with type arguments of type MasterTorsionAngleType

Modifier and Type	Method	Description
ImmutableAverageTorsionAngleType.Builder	ImmutableAverageTorsionAngleType.Builder.addAllConsideredAngles(Iterable<? extends MasterTorsionAngleType> elements)	Adds elements to consideredAngles list.
ImmutableAverageTorsionAngleType.Builder	ImmutableAverageTorsionAngleType.Builder.consideredAngles(Iterable<? extends MasterTorsionAngleType> elements)	Sets or replaces all elements for consideredAngles list.
static ImmutableAverageTorsionAngleType	ImmutableAverageTorsionAngleType.of(MoleculeType moleculeType, Iterable<? extends MasterTorsionAngleType> consideredAngles)	Construct a new immutable AverageTorsionAngleType instance.
static ImmutableAverageTorsionAngleType	ImmutableAverageTorsionAngleType.of(MoleculeType moleculeType, List<MasterTorsionAngleType> consideredAngles)	Construct a new immutable AverageTorsionAngleType instance.
ImmutableAverageTorsionAngleType	ImmutableAverageTorsionAngleType.withConsideredAngles(Iterable<? extends MasterTorsionAngleType> elements)	Copy the current immutable object with elements that replace the content of consideredAngles.