Uses of Package
pl.poznan.put.structure.pseudoknots

Packages that use pl.poznan.put.structure.pseudoknots

Package	Description
pl.poznan.put.structure.formats
pl.poznan.put.structure.pseudoknots	Package contains classes that handle pseudoknots in secondary structure.
pl.poznan.put.structure.pseudoknots.dp	A set of dynamic programming solutions to pseudoknot detection.s
pl.poznan.put.structure.pseudoknots.elimination

Classes in pl.poznan.put.structure.pseudoknots used by pl.poznan.put.structure.formats

Class	Description
PseudoknotFinder	A finder of pseudoknots in RNA secondary structure.

Classes in pl.poznan.put.structure.pseudoknots used by pl.poznan.put.structure.pseudoknots

Class	Description
ConflictGraph	A graph of conflicts between regions.
ImmutableConflictGraph	Immutable implementation of ConflictGraph.
ImmutableConflictGraph.Builder	Builds instances of type ImmutableConflictGraph.
ImmutableRegion	Immutable implementation of Region.
ImmutableRegion.Builder	Builds instances of type ImmutableRegion.
Region	A collection of pairs (BPSEQ entries) which are consecutive in sequence.

Classes in pl.poznan.put.structure.pseudoknots used by pl.poznan.put.structure.pseudoknots.dp

Class	Description
PseudoknotFinder	A finder of pseudoknots in RNA secondary structure.
Region	A collection of pairs (BPSEQ entries) which are consecutive in sequence.

Classes in pl.poznan.put.structure.pseudoknots used by pl.poznan.put.structure.pseudoknots.elimination

Class	Description
ConflictGraph	A graph of conflicts between regions.
PseudoknotFinder	A finder of pseudoknots in RNA secondary structure.
Region	A collection of pairs (BPSEQ entries) which are consecutive in sequence.