Package pl.poznan.put.structure.pseudoknots

Package contains classes that handle pseudoknots in secondary structure.

Interface Summary

Interface	Description
PseudoknotFinder	A finder of pseudoknots in RNA secondary structure.

Class Summary

Class	Description
ConflictGraph	A graph of conflicts between regions.
ImmutableConflictGraph	Immutable implementation of ConflictGraph.
ImmutableConflictGraph.Builder	Builds instances of type ImmutableConflictGraph.
ImmutableRegion	Immutable implementation of Region.
ImmutableRegion.Builder	Builds instances of type ImmutableRegion.
Region	A collection of pairs (BPSEQ entries) which are consecutive in sequence.