RegionRemover (BioCommons 3.0.4 API)

All Superinterfaces:

PseudoknotFinder

All Known Implementing Classes:

AbstractRegionRemover, ImmutableMaxConflicts, ImmutableMinGain, MaxConflicts, MinGain
```
public interface RegionRemover
extends PseudoknotFinder
```
A pseudoknot finder algorithm which works by selecting a region to remove in each iteration.

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`Region`	`selectRegionToRemove(ConflictGraph conflictGraph)`	Uses data in the conflict graph to select one region to be removed.

Methods inherited from interface pl.poznan.put.structure.pseudoknots.PseudoknotFinder
findPseudoknots

- Method Detail
  - selectRegionToRemove
```
Region selectRegionToRemove(ConflictGraph conflictGraph)
```
    Uses data in the conflict graph to select one region to be removed.
    
    Parameters:
    
    conflictGraph - The graph of conflicts between regions.
    
    Returns:
    
    A region to be removed.