Uses of Package pl.poznan.put.structure.pseudoknots.dp (BioCommons 3.0.4 API)

Packages that use pl.poznan.put.structure.pseudoknots.dp
Package	Description
pl.poznan.put.structure.pseudoknots	Package contains classes that handle pseudoknots in secondary structure.
pl.poznan.put.structure.pseudoknots.dp	A set of dynamic programming solutions to pseudoknot detection.s

Classes in pl.poznan.put.structure.pseudoknots.dp used by pl.poznan.put.structure.pseudoknots
Class Description

ConflictClique
A collection of regions conflicting with each other.

Classes in pl.poznan.put.structure.pseudoknots.dp used by pl.poznan.put.structure.pseudoknots.dp
Class	Description
ConflictClique	A collection of regions conflicting with each other.
DynamicProgrammingAll	Java implementation of OPT ALL algorithm as presented in: Smit, S. et al., 2008.
ImmutableConflictClique	Immutable implementation of `ConflictClique`.
ImmutableConflictClique.Builder	Builds instances of type `ImmutableConflictClique`.
ImmutableDynamicProgrammingAll	Immutable implementation of `DynamicProgrammingAll`.
ImmutableDynamicProgrammingAll.Builder	Builds instances of type `ImmutableDynamicProgrammingAll`.

Uses of Packagepl.poznan.put.structure.pseudoknots.dp