Package pl.poznan.put.structure.pseudoknots.dp

A set of dynamic programming solutions to pseudoknot detection.s

Class Summary

Class	Description
ConflictClique	A collection of regions conflicting with each other.
DynamicProgrammingAll	Java implementation of OPT ALL algorithm as presented in: Smit, S. et al., 2008.
ImmutableConflictClique	Immutable implementation of ConflictClique.
ImmutableConflictClique.Builder	Builds instances of type ImmutableConflictClique.
ImmutableDynamicProgrammingAll	Immutable implementation of DynamicProgrammingAll.
ImmutableDynamicProgrammingAll.Builder	Builds instances of type ImmutableDynamicProgrammingAll.