Uses of Class
pl.poznan.put.structure.pseudoknots.ConflictGraph

Packages that use ConflictGraph

Package	Description
pl.poznan.put.structure.pseudoknots	Package contains classes that handle pseudoknots in secondary structure.
pl.poznan.put.structure.pseudoknots.elimination

Uses of ConflictGraph in pl.poznan.put.structure.pseudoknots

Subclasses of ConflictGraph in pl.poznan.put.structure.pseudoknots

Modifier and Type	Class	Description
class	ImmutableConflictGraph	Immutable implementation of ConflictGraph.

Methods in pl.poznan.put.structure.pseudoknots that return ConflictGraph

Modifier and Type	Method	Description
ConflictGraph	ConflictGraph.simplified()	Creates a simplified copy of this instance.

Methods in pl.poznan.put.structure.pseudoknots with parameters of type ConflictGraph

Modifier and Type	Method	Description
static ImmutableConflictGraph	ImmutableConflictGraph.copyOf(ConflictGraph instance)	Creates an immutable copy of a ConflictGraph value.
ImmutableConflictGraph.Builder	ImmutableConflictGraph.Builder.from(ConflictGraph instance)	Fill a builder with attribute values from the provided ConflictGraph instance.

Uses of ConflictGraph in pl.poznan.put.structure.pseudoknots.elimination

Methods in pl.poznan.put.structure.pseudoknots.elimination with parameters of type ConflictGraph

Modifier and Type	Method	Description
Region	MaxConflicts.selectRegionToRemove(ConflictGraph conflictGraph)	Selects a region which has the most conflicts with other regions.
Region	MinGain.selectRegionToRemove(ConflictGraph conflictGraph)	Selects a region which has the least gain (sum of length of all regions in conflict).
Region	RegionRemover.selectRegionToRemove(ConflictGraph conflictGraph)	Uses data in the conflict graph to select one region to be removed.