Uses of Package
pl.poznan.put.structure

Packages that use pl.poznan.put.structure

Package	Description
pl.poznan.put.notation	A set of enums describing different notations used in structural biology.
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.
pl.poznan.put.rna
pl.poznan.put.structure	Package contains classes useful in describing secondary structure (base pairs, helices, etc.)
pl.poznan.put.structure.formats

Classes in pl.poznan.put.structure used by pl.poznan.put.notation

Class	Description
BasePair	A pairing between two nucleotides' bases.

Classes in pl.poznan.put.structure used by pl.poznan.put.pdb.analysis

Class	Description
QuantifiedBasePair	A base pair which is classified and quantified with numerical parameters.

Classes in pl.poznan.put.structure used by pl.poznan.put.rna

Class	Description
ClassifiedBasePair	A pair of interacting nucleotides with classification info.

Classes in pl.poznan.put.structure used by pl.poznan.put.structure

Class	Description
AnalyzedBasePair	A pair of residues with metadata taken from analysis tool.
BasePair	A pairing between two nucleotides' bases.
ClassifiedBasePair	A pair of interacting nucleotides with classification info.
DotBracketSymbol	A single symbol in a dot-bracket structure.
HelixOrigin	An information whether a base pair originated from a helix.
ImmutableAnalyzedBasePair	Immutable implementation of AnalyzedBasePair.
ImmutableAnalyzedBasePair.Builder	Builds instances of type ImmutableAnalyzedBasePair.
ImmutableBasePair	Immutable implementation of BasePair.
ImmutableBasePair.Builder	Builds instances of type ImmutableBasePair.
ImmutableDotBracketSymbol	Immutable implementation of DotBracketSymbol.
ImmutableDotBracketSymbol.Builder	Builds instances of type ImmutableDotBracketSymbol.
ImmutableQuantifiedBasePair	Immutable implementation of QuantifiedBasePair.
ImmutableQuantifiedBasePair.Builder	Builds instances of type ImmutableQuantifiedBasePair.
QuantifiedBasePair	A base pair which is classified and quantified with numerical parameters.

Classes in pl.poznan.put.structure used by pl.poznan.put.structure.formats

Class	Description
ClassifiedBasePair	A pair of interacting nucleotides with classification info.
DotBracketSymbol	A single symbol in a dot-bracket structure.