Package pl.poznan.put.structure

Package contains classes useful in describing secondary structure (base pairs, helices, etc.)

Interface Summary

Interface	Description
ClassifiedBasePair	A pair of interacting nucleotides with classification info.

Class Summary

Class	Description
AnalyzedBasePair	A pair of residues with metadata taken from analysis tool.
BasePair	A pairing between two nucleotides' bases.
CanonicalStructureExtractor	A set of methods to analyze 3D data to extract the canonical 2D structure.
DotBracketSymbol	A single symbol in a dot-bracket structure.
ImmutableAnalyzedBasePair	Immutable implementation of AnalyzedBasePair.
ImmutableAnalyzedBasePair.Builder	Builds instances of type ImmutableAnalyzedBasePair.
ImmutableBasePair	Immutable implementation of BasePair.
ImmutableBasePair.Builder	Builds instances of type ImmutableBasePair.
ImmutableDotBracketSymbol	Immutable implementation of DotBracketSymbol.
ImmutableDotBracketSymbol.Builder	Builds instances of type ImmutableDotBracketSymbol.
ImmutableQuantifiedBasePair	Immutable implementation of QuantifiedBasePair.
ImmutableQuantifiedBasePair.Builder	Builds instances of type ImmutableQuantifiedBasePair.
QuantifiedBasePair	A base pair which is classified and quantified with numerical parameters.

Enum Summary

Enum	Description
HelixOrigin	An information whether a base pair originated from a helix.