Uses of Interface pl.poznan.put.structure.formats.Strand (BioCommons 3.0.4 API)

Packages that use Strand
Package Description

pl.poznan.put.structure.formats

Uses of Strand in pl.poznan.put.structure.formats

Classes in pl.poznan.put.structure.formats that implement Strand
Modifier and Type	Class	Description
`class`	`DefaultStrand`	A default implementation of a strand.
`class`	`ImmutableDefaultStrand`	Immutable implementation of `DefaultStrand`.
`class`	`ImmutableStrandView`	Immutable implementation of `StrandView`.
`class`	`StrandView`	A strand which is defined as a fragment of a dot-bracket structure.

Methods in pl.poznan.put.structure.formats that return Strand
Modifier and Type	Method	Description
`default Strand`	DotBracket.`findStrand(DotBracketSymbol symbol)`	Finds a strand which contains the given symbol.

Methods in pl.poznan.put.structure.formats that return types with arguments of type Strand
Modifier and Type	Method	Description
`protected abstract List<Strand>`	AbstractCombinedStrand.`inputStrands()`
`protected abstract List<Strand>`	CombinedStrand.`inputStrands()`
`protected abstract List<Strand>`	CombinedStrandFromPdb.`inputStrands()`
`protected List<Strand>`	ImmutableCombinedStrand.`inputStrands()`
`protected List<Strand>`	ImmutableCombinedStrandFromPdb.`inputStrands()`
`List<Strand>`	AbstractCombinedStrand.`strands()`
`List<Strand>`	CombinedStrand.`strands()`
`List<Strand>`	CombinedStrandFromPdb.`strands()`
`List<Strand>`	DefaultDotBracket.`strands()`
`List<Strand>`	DefaultDotBracketFromPdb.`strands()`
`default List<Strand>`	DotBracket.`strands()`
`List<Strand>`	ImmutableCombinedStrand.`strands()`
`List<Strand>`	ImmutableCombinedStrandFromPdb.`strands()`
`List<Strand>`	ImmutableDefaultDotBracket.`strands()`
`List<Strand>`	ImmutableDefaultDotBracketFromPdb.`strands()`

Methods in pl.poznan.put.structure.formats with parameters of type Strand
Modifier and Type	Method	Description
`ImmutableCombinedStrand.Builder`	ImmutableCombinedStrand.Builder.`addInputStrands(Strand element)`	Adds one element to `inputStrands` list.
`ImmutableCombinedStrand.Builder`	ImmutableCombinedStrand.Builder.`addInputStrands(Strand... elements)`	Adds elements to `inputStrands` list.
`ImmutableCombinedStrandFromPdb.Builder`	ImmutableCombinedStrandFromPdb.Builder.`addInputStrands(Strand element)`	Adds one element to `inputStrands` list.
`ImmutableCombinedStrandFromPdb.Builder`	ImmutableCombinedStrandFromPdb.Builder.`addInputStrands(Strand... elements)`	Adds elements to `inputStrands` list.
`ImmutableDefaultDotBracket.Builder`	ImmutableDefaultDotBracket.Builder.`addStrands(Strand element)`	Adds one element to `strands` list.
`ImmutableDefaultDotBracket.Builder`	ImmutableDefaultDotBracket.Builder.`addStrands(Strand... elements)`	Adds elements to `strands` list.
`ImmutableDefaultDotBracketFromPdb.Builder`	ImmutableDefaultDotBracketFromPdb.Builder.`addStrands(Strand element)`	Adds one element to `strands` list.
`ImmutableDefaultDotBracketFromPdb.Builder`	ImmutableDefaultDotBracketFromPdb.Builder.`addStrands(Strand... elements)`	Adds elements to `strands` list.
`ImmutableDefaultStrand.Builder`	ImmutableDefaultStrand.Builder.`from(Strand instance)`	Fill a builder with attribute values from the provided `pl.poznan.put.structure.formats.Strand` instance.
`ImmutableStrandView.Builder`	ImmutableStrandView.Builder.`from(Strand instance)`	Fill a builder with attribute values from the provided `pl.poznan.put.structure.formats.Strand` instance.
`ImmutableCombinedStrand`	ImmutableCombinedStrand.`withInputStrands(Strand... elements)`	Copy the current immutable object with elements that replace the content of `inputStrands`.
`ImmutableCombinedStrandFromPdb`	ImmutableCombinedStrandFromPdb.`withInputStrands(Strand... elements)`	Copy the current immutable object with elements that replace the content of `inputStrands`.
`ImmutableDefaultDotBracket`	ImmutableDefaultDotBracket.`withStrands(Strand... elements)`	Copy the current immutable object with elements that replace the content of `strands`.
`ImmutableDefaultDotBracketFromPdb`	ImmutableDefaultDotBracketFromPdb.`withStrands(Strand... elements)`	Copy the current immutable object with elements that replace the content of `strands`.

Method parameters in pl.poznan.put.structure.formats with type arguments of type Strand
Modifier and Type	Method	Description
`ImmutableCombinedStrand.Builder`	ImmutableCombinedStrand.Builder.`addAllInputStrands(Iterable<? extends Strand> elements)`	Adds elements to `inputStrands` list.
`ImmutableCombinedStrandFromPdb.Builder`	ImmutableCombinedStrandFromPdb.Builder.`addAllInputStrands(Iterable<? extends Strand> elements)`	Adds elements to `inputStrands` list.
`ImmutableDefaultDotBracket.Builder`	ImmutableDefaultDotBracket.Builder.`addAllStrands(Iterable<? extends Strand> elements)`	Adds elements to `strands` list.
`ImmutableDefaultDotBracketFromPdb.Builder`	ImmutableDefaultDotBracketFromPdb.Builder.`addAllStrands(Iterable<? extends Strand> elements)`	Adds elements to `strands` list.
`ImmutableCombinedStrand.Builder`	ImmutableCombinedStrand.Builder.`inputStrands(Iterable<? extends Strand> elements)`	Sets or replaces all elements for `inputStrands` list.
`ImmutableCombinedStrandFromPdb.Builder`	ImmutableCombinedStrandFromPdb.Builder.`inputStrands(Iterable<? extends Strand> elements)`	Sets or replaces all elements for `inputStrands` list.
`static ImmutableCombinedStrand`	ImmutableCombinedStrand.`of(Iterable<? extends Strand> inputStrands)`	Construct a new immutable `CombinedStrand` instance.
`static ImmutableCombinedStrand`	ImmutableCombinedStrand.`of(List<Strand> inputStrands)`	Construct a new immutable `CombinedStrand` instance.
`static ImmutableCombinedStrandFromPdb`	ImmutableCombinedStrandFromPdb.`of(Iterable<? extends Strand> inputStrands, Map<? extends DotBracketSymbol,? extends PdbResidueIdentifier> inputSymbolToResidue)`	Construct a new immutable `CombinedStrandFromPdb` instance.
`static ImmutableCombinedStrandFromPdb`	ImmutableCombinedStrandFromPdb.`of(List<Strand> inputStrands, Map<DotBracketSymbol,PdbResidueIdentifier> inputSymbolToResidue)`	Construct a new immutable `CombinedStrandFromPdb` instance.
`ImmutableDefaultDotBracket.Builder`	ImmutableDefaultDotBracket.Builder.`strands(Iterable<? extends Strand> elements)`	Sets or replaces all elements for `strands` list.
`ImmutableDefaultDotBracketFromPdb.Builder`	ImmutableDefaultDotBracketFromPdb.Builder.`strands(Iterable<? extends Strand> elements)`	Sets or replaces all elements for `strands` list.
`ImmutableCombinedStrand`	ImmutableCombinedStrand.`withInputStrands(Iterable<? extends Strand> elements)`	Copy the current immutable object with elements that replace the content of `inputStrands`.
`ImmutableCombinedStrandFromPdb`	ImmutableCombinedStrandFromPdb.`withInputStrands(Iterable<? extends Strand> elements)`	Copy the current immutable object with elements that replace the content of `inputStrands`.
`ImmutableDefaultDotBracket`	ImmutableDefaultDotBracket.`withStrands(Iterable<? extends Strand> elements)`	Copy the current immutable object with elements that replace the content of `strands`.
`ImmutableDefaultDotBracketFromPdb`	ImmutableDefaultDotBracketFromPdb.`withStrands(Iterable<? extends Strand> elements)`	Copy the current immutable object with elements that replace the content of `strands`.