StrandView (BioCommons 3.0.4 API)

java.lang.Object
- pl.poznan.put.structure.formats.StrandView

All Implemented Interfaces:

DotBracket, Strand

Direct Known Subclasses:

ImmutableStrandView
```
@Immutable
public abstract class StrandView
extends Object
implements Strand
```
A strand which is defined as a fragment of a dot-bracket structure.

Constructor Summary

Constructors
Constructor Description

StrandView()

Method Summary

All Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method	Description
`abstract int`	`begin()`
`String`	`description()`	Prepares description of strand in RNAComposer format.
`abstract int`	`end()`
`abstract String`	`name()`
`abstract DotBracket`	`parent()`
`List<DotBracketSymbol>`	`symbols()`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface pl.poznan.put.structure.formats.DotBracket
combineStrands, containsMissing, findStrand, length, missingInternal, missingTerminal, originalIndex, pairs, pseudoknotOrder, sequence, sequence, strands, structure, structure, toStringWithStrands

Methods inherited from interface pl.poznan.put.structure.formats.Strand
isSingleStrand, missingBegin, missingEnd, sequenceRY

- Constructor Detail
  - StrandView
```
public StrandView()
```
- Method Detail
  - name
```
@Parameter(order=1)
public abstract String name()
```
    Specified by:
    
    name in interface Strand
    
    Returns:
    
    The name of the strand.
  - description
```
public final String description()
```
    Description copied from interface: Strand
    
    Prepares description of strand in RNAComposer format. The format has 5 elements: index-from, index-to, sequence, structure, RY-sequence.
    
    Specified by:
    
    description in interface Strand
    
    Returns:
    
    A description of strand in RNAComposer format.
  - begin
```
@Parameter(order=3)
public abstract int begin()
```
    Specified by:
    
    begin in interface Strand
    
    Returns:
    
    The index of the first residue in this strand.
  - end
```
@Parameter(order=4)
public abstract int end()
```
    Specified by:
    
    end in interface Strand
    
    Returns:
    
    The index of the last residue in this strand.
  - parent
```
@Parameter(order=2)
public abstract DotBracket parent()
```
    Returns:
    
    The parent dot-bracket structure of this strand.
  - symbols
```
@Lazy
public List<DotBracketSymbol> symbols()
```
    Specified by:
    
    symbols in interface DotBracket
    
    Returns:
    
    The list of dot-bracket symbols.
  - toString
```
public final String toString()
```
    Overrides:
    
    toString in class Object