CanonicalStructureExtractor (BioCommons 3.0.4 API)

java.lang.Object
- pl.poznan.put.structure.CanonicalStructureExtractor

```
public final class CanonicalStructureExtractor
extends Object
```
A set of methods to analyze 3D data to extract the canonical 2D structure.

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static Collection<ClassifiedBasePair>`	`basePairs(ResidueCollection residueCollection)`
`static BpSeq`	`bpSeq(ResidueCollection residueCollection)`	Extracts the canonical secondary structure from the 3D data and outputs it in BPSEQ format.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Method Detail
  - bpSeq
```
public static BpSeq bpSeq(ResidueCollection residueCollection)
```
    Extracts the canonical secondary structure from the 3D data and outputs it in BPSEQ format.
    
    Parameters:
    
    residueCollection - A collection of residues to analyze.
    
    Returns:
    
    A secondary structure in BPSEQ format.
  - basePairs
```
public static Collection<ClassifiedBasePair> basePairs(ResidueCollection residueCollection)
```