Uses of Package
pl.poznan.put.rna

Packages that use pl.poznan.put.rna

Package	Description
pl.poznan.put.rna
pl.poznan.put.structure	Package contains classes useful in describing secondary structure (base pairs, helices, etc.)

Classes in pl.poznan.put.rna used by pl.poznan.put.rna

Class	Description
BasePairParameters
Chi	A glycosidic bond torsion angle (chi), which is defined differently for purines and pyrimidines.
ChiRange	A range description for chi torsion angle type as defined in Saenger's "Principles...".
ImmutableBasePairParameters	Immutable implementation of BasePairParameters.
ImmutableBasePairParameters.Builder	Builds instances of type ImmutableBasePairParameters.
ImmutableInteractionType	Immutable implementation of InteractionType.
ImmutableInteractionType.Builder	Builds instances of type ImmutableInteractionType.
ImmutablePhosphate	Immutable implementation of Phosphate.
ImmutablePhosphate.Builder	Builds instances of type ImmutablePhosphate.
ImmutablePseudophasePuckerType	Immutable implementation of PseudophasePuckerType.
ImmutablePseudophasePuckerType.Builder	Builds instances of type ImmutablePseudophasePuckerType.
ImmutableRibose	Immutable implementation of Ribose.
ImmutableRibose.Builder	Builds instances of type ImmutableRibose.
ImmutableStandardReferenceFrame	Immutable implementation of StandardReferenceFrame.
ImmutableStandardReferenceFrame.Builder	Builds instances of type ImmutableStandardReferenceFrame.
InteractionType	A type of interaction between two nucleotides.
NucleicAcidResidueComponent	A component of a nucleotide.
Nucleobase	A nucleobase (adenine, cytosine, guanine, uracil or thymine).
Nucleotide	A nucleotide (A, C, G, U or T) with all details regarding atoms, torsion angles, etc.
NucleotideComponentType	A type of the nucleotide component.
NucleotideTorsionAngle	A torsion angle defined in a nucleotide.
Phosphate	A phosphate, part of RNA backbone.
PseudophasePuckerType	An angle describing the pseudophase pucker.
Pseudorotation	A range of pseudorotation values with their descriptions.
Ribose	A ribose, part of RNA backbone.
StandardReferenceFrame

Classes in pl.poznan.put.rna used by pl.poznan.put.structure

Class	Description
InteractionType	A type of interaction between two nucleotides.