Package pl.poznan.put.rna

Class StandardReferenceFrame

java.lang.Object

pl.poznan.put.rna.StandardReferenceFrame

Direct Known Subclasses:

ImmutableStandardReferenceFrame

@Immutable
public abstract class StandardReferenceFrame
extends Object

Constructor Summary

Constructors

Constructor	Description
StandardReferenceFrame()

Method Summary

Modifier and Type	Method	Description
Optional<PdbAtomLine>	longAxisAtom()
static StandardReferenceFrame	ofBasePair(StandardReferenceFrame primary, StandardReferenceFrame secondary)
static StandardReferenceFrame	ofResidue(PdbResidue residue)
abstract org.apache.commons.math3.geometry.euclidean.threed.Vector3D	origin()
abstract org.apache.commons.math3.geometry.euclidean.threed.Vector3D	x()
abstract org.apache.commons.math3.geometry.euclidean.threed.Vector3D	y()
abstract org.apache.commons.math3.geometry.euclidean.threed.Vector3D	z()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

StandardReferenceFrame

public StandardReferenceFrame()

Method Detail

ofResidue

public static StandardReferenceFrame ofResidue(PdbResidue residue)

ofBasePair

public static StandardReferenceFrame ofBasePair(StandardReferenceFrame primary,
                                                StandardReferenceFrame secondary)

origin

@Parameter(order=1)
public abstract org.apache.commons.math3.geometry.euclidean.threed.Vector3D origin()

x

@Parameter(order=2)
public abstract org.apache.commons.math3.geometry.euclidean.threed.Vector3D x()

y

@Parameter(order=3)
public abstract org.apache.commons.math3.geometry.euclidean.threed.Vector3D y()

z

@Parameter(order=4)
public abstract org.apache.commons.math3.geometry.euclidean.threed.Vector3D z()

longAxisAtom

@Default
public Optional<PdbAtomLine> longAxisAtom()