Package pl.poznan.put.rna

Enum Nucleotide

java.lang.Object

java.lang.Enum<Nucleotide>

pl.poznan.put.rna.Nucleotide

All Implemented Interfaces:

Serializable, Comparable<Nucleotide>, ResidueInformationProvider

public enum Nucleotide
extends Enum<Nucleotide>
implements ResidueInformationProvider

A nucleotide (A, C, G, U or T) with all details regarding atoms, torsion angles, etc.

Enum Constant Summary

Enum Constants

Enum Constant	Description
ADENINE
CYTOSINE
GUANINE
THYMINE
URACIL

Method Summary

Modifier and Type	Method	Description
List<String>	aliases()
List<ResidueComponent>	moleculeComponents()
MoleculeType	moleculeType()
Nucleobase	nucleobase()
char	oneLetterName()
List<TorsionAngleType>	torsionAngleTypes()
static Nucleotide	valueOf(String name)	Returns the enum constant of this type with the specified name.
static Nucleotide[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface pl.poznan.put.pdb.analysis.ResidueInformationProvider

defaultName

Enum Constant Detail

ADENINE

public static final Nucleotide ADENINE

CYTOSINE

public static final Nucleotide CYTOSINE

GUANINE

public static final Nucleotide GUANINE

URACIL

public static final Nucleotide URACIL

THYMINE

public static final Nucleotide THYMINE

Method Detail

values

public static Nucleotide[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Nucleotide c : Nucleotide.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Nucleotide valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

nucleobase

public Nucleobase nucleobase()

Returns:

An instance of nucleobase in this nucleotide.

moleculeType

public MoleculeType moleculeType()

Specified by:

moleculeType in interface ResidueInformationProvider

Returns:

The type of molecule of this residue (RNA or protein).

moleculeComponents

public List<ResidueComponent> moleculeComponents()

Specified by:

moleculeComponents in interface ResidueInformationProvider

Returns:

The list of components this residue consists of.

oneLetterName

public char oneLetterName()

Specified by:

oneLetterName in interface ResidueInformationProvider

Returns:

A one letter name to describe this type of residue.

aliases

public List<String> aliases()

Specified by:

aliases in interface ResidueInformationProvider

Returns:

The list of all names this residues may be found in PDB and mmCIF files.

torsionAngleTypes

public List<TorsionAngleType> torsionAngleTypes()

Specified by:

torsionAngleTypes in interface ResidueInformationProvider

Returns:

The list of torsion angle types defined for this residue.