Package pl.poznan.put.rna

Class ImmutableBasePairParameters.Builder

java.lang.Object

pl.poznan.put.rna.ImmutableBasePairParameters.Builder

Enclosing class:

ImmutableBasePairParameters

@NotThreadSafe
public static final class ImmutableBasePairParameters.Builder
extends Object

Builds instances of type ImmutableBasePairParameters. Initialize attributes and then invoke the build() method to create an immutable instance.

Builder is not thread-safe and generally should not be stored in a field or collection, but instead used immediately to create instances.

Method Summary

Modifier and Type	Method	Description
ImmutableBasePairParameters.Builder	buckle(Angle buckle)	Initializes the value for the buckle attribute.
ImmutableBasePairParameters	build()	Builds a new ImmutableBasePairParameters.
ImmutableBasePairParameters.Builder	from(BasePairParameters instance)	Fill a builder with attribute values from the provided BasePairParameters instance.
ImmutableBasePairParameters.Builder	interBaseAngle(Angle interBaseAngle)	Initializes the value for the interBaseAngle attribute.
ImmutableBasePairParameters.Builder	opening(Angle opening)	Initializes the value for the opening attribute.
ImmutableBasePairParameters.Builder	propeller(Angle propeller)	Initializes the value for the propeller attribute.
ImmutableBasePairParameters.Builder	shear(double shear)	Initializes the value for the shear attribute.
ImmutableBasePairParameters.Builder	stagger(double stagger)	Initializes the value for the stagger attribute.
ImmutableBasePairParameters.Builder	stretch(double stretch)	Initializes the value for the stretch attribute.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

from

public final ImmutableBasePairParameters.Builder from(BasePairParameters instance)

Fill a builder with attribute values from the provided BasePairParameters instance. Regular attribute values will be replaced with those from the given instance. Absent optional values will not replace present values.

Parameters:

instance - The instance from which to copy values

Returns:

this builder for use in a chained invocation

shear

public final ImmutableBasePairParameters.Builder shear(double shear)

Initializes the value for the shear attribute.

Parameters:

shear - The value for shear

Returns:

this builder for use in a chained invocation

stretch

public final ImmutableBasePairParameters.Builder stretch(double stretch)

Initializes the value for the stretch attribute.

Parameters:

stretch - The value for stretch

Returns:

this builder for use in a chained invocation

stagger

public final ImmutableBasePairParameters.Builder stagger(double stagger)

Initializes the value for the stagger attribute.

Parameters:

stagger - The value for stagger

Returns:

this builder for use in a chained invocation

buckle

public final ImmutableBasePairParameters.Builder buckle(Angle buckle)

Initializes the value for the buckle attribute.

Parameters:

buckle - The value for buckle

Returns:

this builder for use in a chained invocation

propeller

public final ImmutableBasePairParameters.Builder propeller(Angle propeller)

Initializes the value for the propeller attribute.

Parameters:

propeller - The value for propeller

Returns:

this builder for use in a chained invocation

opening

public final ImmutableBasePairParameters.Builder opening(Angle opening)

Initializes the value for the opening attribute.

Parameters:

opening - The value for opening

Returns:

this builder for use in a chained invocation

interBaseAngle

public final ImmutableBasePairParameters.Builder interBaseAngle(Angle interBaseAngle)

Initializes the value for the interBaseAngle attribute.

Parameters:

interBaseAngle - The value for interBaseAngle

Returns:

this builder for use in a chained invocation

build

public ImmutableBasePairParameters build()

Builds a new ImmutableBasePairParameters.

Returns:

An immutable instance of BasePairParameters

Throws:

IllegalStateException - if any required attributes are missing