Package pl.poznan.put.protein

Enum AminoAcid

java.lang.Object

java.lang.Enum<AminoAcid>

pl.poznan.put.protein.AminoAcid

All Implemented Interfaces:

Serializable, Comparable<AminoAcid>, ResidueInformationProvider

public enum AminoAcid
extends Enum<AminoAcid>
implements ResidueInformationProvider

An amino acid with all details regarding its atoms, torsion angles, etc.

Enum Constant Summary

Enum Constants

Enum Constant	Description
ALANINE
ARGININE
ASPARAGINE
ASPARTIC_ACID
CYSTEINE
GLUTAMIC_ACID
GLUTAMINE
GLYCINE
HISTIDINE
ISOLEUCINE
LEUCINE
LYSINE
METHIONINE
PHENYLALANINE
PROLINE
SERINE
THREONINE
TRYPTOPHAN
TYROSINE
VALINE

Method Summary

Modifier and Type	Method	Description
List<String>	aliases()
List<ResidueComponent>	moleculeComponents()
MoleculeType	moleculeType()
char	oneLetterName()
Sidechain	sidechain()
List<TorsionAngleType>	torsionAngleTypes()
static AminoAcid	valueOf(String name)	Returns the enum constant of this type with the specified name.
static AminoAcid[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface pl.poznan.put.pdb.analysis.ResidueInformationProvider

defaultName

Enum Constant Detail

ALANINE

public static final AminoAcid ALANINE

ARGININE

public static final AminoAcid ARGININE

ASPARAGINE

public static final AminoAcid ASPARAGINE

ASPARTIC_ACID

public static final AminoAcid ASPARTIC_ACID

CYSTEINE

public static final AminoAcid CYSTEINE

GLUTAMIC_ACID

public static final AminoAcid GLUTAMIC_ACID

GLUTAMINE

public static final AminoAcid GLUTAMINE

GLYCINE

public static final AminoAcid GLYCINE

HISTIDINE

public static final AminoAcid HISTIDINE

ISOLEUCINE

public static final AminoAcid ISOLEUCINE

LEUCINE

public static final AminoAcid LEUCINE

LYSINE

public static final AminoAcid LYSINE

METHIONINE

public static final AminoAcid METHIONINE

PHENYLALANINE

public static final AminoAcid PHENYLALANINE

PROLINE

public static final AminoAcid PROLINE

SERINE

public static final AminoAcid SERINE

THREONINE

public static final AminoAcid THREONINE

TRYPTOPHAN

public static final AminoAcid TRYPTOPHAN

TYROSINE

public static final AminoAcid TYROSINE

VALINE

public static final AminoAcid VALINE

Method Detail

values

public static AminoAcid[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (AminoAcid c : AminoAcid.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static AminoAcid valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

sidechain

public Sidechain sidechain()

Returns:

The sidechain instance.

moleculeType

public MoleculeType moleculeType()

Specified by:

moleculeType in interface ResidueInformationProvider

Returns:

The type of molecule of this residue (RNA or protein).

moleculeComponents

public List<ResidueComponent> moleculeComponents()

Specified by:

moleculeComponents in interface ResidueInformationProvider

Returns:

The list of components this residue consists of.

oneLetterName

public char oneLetterName()

Specified by:

oneLetterName in interface ResidueInformationProvider

Returns:

A one letter name to describe this type of residue.

aliases

public List<String> aliases()

Specified by:

aliases in interface ResidueInformationProvider

Returns:

The list of all names this residues may be found in PDB and mmCIF files.

torsionAngleTypes

public List<TorsionAngleType> torsionAngleTypes()

Specified by:

torsionAngleTypes in interface ResidueInformationProvider

Returns:

The list of torsion angle types defined for this residue.