Package pl.poznan.put.pdb
Contains classes responsible for PDB/mmCIF data modelling and analysis.
-
Interface Summary Interface Description ChainNumberICode A set of methods that allow to address a residue by its chain name, residue number and insertion code. -
Class Summary Class Description ImmutablePdbAtomLine Immutable implementation ofPdbAtomLine.ImmutablePdbAtomLine.Builder Builds instances of typeImmutablePdbAtomLine.ImmutablePdbExpdtaLine Immutable implementation ofPdbExpdtaLine.ImmutablePdbExpdtaLine.Builder Builds instances of typeImmutablePdbExpdtaLine.ImmutablePdbHeaderLine Immutable implementation ofPdbHeaderLine.ImmutablePdbHeaderLine.Builder Builds instances of typeImmutablePdbHeaderLine.ImmutablePdbModresLine Immutable implementation ofPdbModresLine.ImmutablePdbModresLine.Builder Builds instances of typeImmutablePdbModresLine.ImmutablePdbNamedResidueIdentifier Immutable implementation ofPdbNamedResidueIdentifier.ImmutablePdbNamedResidueIdentifier.Builder Builds instances of typeImmutablePdbNamedResidueIdentifier.ImmutablePdbRemark2Line Immutable implementation ofPdbRemark2Line.ImmutablePdbRemark2Line.Builder Builds instances of typeImmutablePdbRemark2Line.ImmutablePdbRemark465Line Immutable implementation ofPdbRemark465Line.ImmutablePdbRemark465Line.Builder Builds instances of typeImmutablePdbRemark465Line.ImmutablePdbResidueIdentifier Immutable implementation ofPdbResidueIdentifier.ImmutablePdbResidueIdentifier.Builder Builds instances of typeImmutablePdbResidueIdentifier.ImmutablePdbTitleLine Immutable implementation ofPdbTitleLine.ImmutablePdbTitleLine.Builder Builds instances of typeImmutablePdbTitleLine.PdbAtomLine Representation of ATOM and HETATM lines in both PDB and mmCIF files.PdbExpdtaLine A representation of EXPDTA line in PDB files.PdbHeaderLine A representation of HEADER file in PDB format.PdbModresLine A representation of MODRES line in PDB format.PdbNamedResidueIdentifier Class that represents a residue identifier with a known name.PdbRemark2Line A representation of REMARK 2 line which describes experimental resolution.PdbRemark465Line A representation of REMARK 465 in PDB format which describes missing residues.PdbResidueIdentifier A residue identifier is used only to address a residue in the structure.PdbTitleLine A representation of TITLE line in PDB format. -
Enum Summary Enum Description ExperimentalTechnique An experimental technique used to solve a structure (according to the PDB sources). -
Exception Summary Exception Description CifPdbIncompatibilityException When it is impossible to convert from mmCIF to PDB.PdbParsingException When data in PDB files is inconsistent with the documented format.