Uses of Class
pl.poznan.put.pdb.analysis.MoleculeType

Packages that use MoleculeType

Package	Description
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.
pl.poznan.put.protein
pl.poznan.put.rna
pl.poznan.put.torsion	Contains classes dealing with torsion angles handling.

Uses of MoleculeType in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return MoleculeType

Modifier and Type	Method	Description
MoleculeType	ResidueInformationProvider.moleculeType()
default MoleculeType	SingleTypedResidueCollection.moleculeType()
static MoleculeType	MoleculeType.valueOf(String name)	Returns the enum constant of this type with the specified name.
static MoleculeType[]	MoleculeType.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in pl.poznan.put.pdb.analysis with parameters of type MoleculeType

Modifier and Type	Method	Description
default boolean	PdbModel.containsAny(MoleculeType moleculeType)	Checks if any chain is of a given type.
default List<PdbAtomLine>	ResidueCollection.filteredAtoms(MoleculeType moleculeType)	Filters atoms in this residue collection.
default List<PdbRemark465Line>	PdbModel.filteredMissing(MoleculeType moleculeType)	Finds all missing residues of the given type.
CifModel	DefaultCifModel.filteredNewInstance(MoleculeType moleculeType)
PdbModel	DefaultPdbModel.filteredNewInstance(MoleculeType moleculeType)
PdbModel	PdbModel.filteredNewInstance(MoleculeType moleculeType)	Filters out residues of a given molecule type (RNA or protein) and creates a new instance of this class.

Uses of MoleculeType in pl.poznan.put.protein

Methods in pl.poznan.put.protein that return MoleculeType

Modifier and Type	Method	Description
MoleculeType	AminoAcid.moleculeType()
default MoleculeType	Sidechain.moleculeType()

Uses of MoleculeType in pl.poznan.put.rna

Methods in pl.poznan.put.rna that return MoleculeType

Modifier and Type	Method	Description
default MoleculeType	Nucleobase.moleculeType()
MoleculeType	Nucleotide.moleculeType()
MoleculeType	PseudophasePuckerType.moleculeType()

Uses of MoleculeType in pl.poznan.put.torsion

Methods in pl.poznan.put.torsion that return MoleculeType

Modifier and Type	Method	Description
MoleculeType	AtomBasedTorsionAngleType.moleculeType()
abstract MoleculeType	AverageTorsionAngleType.moleculeType()
MoleculeType	ImmutableAtomBasedTorsionAngleType.moleculeType()
MoleculeType	ImmutableAverageTorsionAngleType.moleculeType()
MoleculeType	TorsionAngleType.moleculeType()

Methods in pl.poznan.put.torsion with parameters of type MoleculeType

Modifier and Type	Method	Description
ImmutableAtomBasedTorsionAngleType.Builder	ImmutableAtomBasedTorsionAngleType.Builder.moleculeType(MoleculeType moleculeType)	Initializes the value for the moleculeType attribute.
ImmutableAverageTorsionAngleType.Builder	ImmutableAverageTorsionAngleType.Builder.moleculeType(MoleculeType moleculeType)	Initializes the value for the moleculeType attribute.
static ImmutableAtomBasedTorsionAngleType	ImmutableAtomBasedTorsionAngleType.of(MoleculeType moleculeType, String shortDisplayName, String exportName, Quadruple<AtomName> atoms, Quadruple<Integer> residueRule)	Construct a new immutable AtomBasedTorsionAngleType instance.
static ImmutableAverageTorsionAngleType	ImmutableAverageTorsionAngleType.of(MoleculeType moleculeType, Iterable<? extends MasterTorsionAngleType> consideredAngles)	Construct a new immutable AverageTorsionAngleType instance.
static ImmutableAverageTorsionAngleType	ImmutableAverageTorsionAngleType.of(MoleculeType moleculeType, List<MasterTorsionAngleType> consideredAngles)	Construct a new immutable AverageTorsionAngleType instance.
ImmutableAtomBasedTorsionAngleType	ImmutableAtomBasedTorsionAngleType.withMoleculeType(MoleculeType value)	Copy the current immutable object by setting a value for the moleculeType attribute.
ImmutableAverageTorsionAngleType	ImmutableAverageTorsionAngleType.withMoleculeType(MoleculeType value)	Copy the current immutable object by setting a value for the moleculeType attribute.