Uses of Class pl.poznan.put.pdb.analysis.ImmutableDefaultCifModel (BioCommons 3.0.4 API)

Packages that use ImmutableDefaultCifModel
Package Description

pl.poznan.put.pdb.analysis
Contains classes which work on data from PDB or mmCIF files.

Uses of ImmutableDefaultCifModel in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return ImmutableDefaultCifModel
Modifier and Type	Method	Description
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.Builder.`build()`	Builds a new `ImmutableDefaultCifModel`.
`static ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`copyOf(DefaultCifModel instance)`	Creates an immutable copy of a `DefaultCifModel` value.
`static ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`of(PdbHeaderLine header, PdbExpdtaLine experimentalData, PdbRemark2Line resolution, int modelNumber, Iterable<? extends PdbAtomLine> atoms, Iterable<? extends PdbModresLine> modifiedResidues, Iterable<? extends PdbRemark465Line> missingResidues, String title, Iterable<? extends PdbResidueIdentifier> chainTerminatedAfter, Iterable<? extends QuantifiedBasePair> basePairs)`	Construct a new immutable `DefaultCifModel` instance.
`static ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`of(PdbHeaderLine header, PdbExpdtaLine experimentalData, PdbRemark2Line resolution, int modelNumber, List<PdbAtomLine> atoms, List<PdbModresLine> modifiedResidues, List<PdbRemark465Line> missingResidues, String title, Set<PdbResidueIdentifier> chainTerminatedAfter, List<QuantifiedBasePair> basePairs)`	Construct a new immutable `DefaultCifModel` instance.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withAtoms(Iterable<? extends PdbAtomLine> elements)`	Copy the current immutable object with elements that replace the content of `atoms`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withAtoms(PdbAtomLine... elements)`	Copy the current immutable object with elements that replace the content of `atoms`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withBasePairs(Iterable<? extends QuantifiedBasePair> elements)`	Copy the current immutable object with elements that replace the content of `basePairs`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withBasePairs(QuantifiedBasePair... elements)`	Copy the current immutable object with elements that replace the content of `basePairs`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withChainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)`	Copy the current immutable object with elements that replace the content of `chainTerminatedAfter`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withChainTerminatedAfter(PdbResidueIdentifier... elements)`	Copy the current immutable object with elements that replace the content of `chainTerminatedAfter`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withExperimentalData(PdbExpdtaLine value)`	Copy the current immutable object by setting a value for the `experimentalData` attribute.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withHeader(PdbHeaderLine value)`	Copy the current immutable object by setting a value for the `header` attribute.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withMissingResidues(Iterable<? extends PdbRemark465Line> elements)`	Copy the current immutable object with elements that replace the content of `missingResidues`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withMissingResidues(PdbRemark465Line... elements)`	Copy the current immutable object with elements that replace the content of `missingResidues`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withModelNumber(int value)`	Copy the current immutable object by setting a value for the `modelNumber` attribute.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withModifiedResidues(Iterable<? extends PdbModresLine> elements)`	Copy the current immutable object with elements that replace the content of `modifiedResidues`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withModifiedResidues(PdbModresLine... elements)`	Copy the current immutable object with elements that replace the content of `modifiedResidues`.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withResolution(PdbRemark2Line value)`	Copy the current immutable object by setting a value for the `resolution` attribute.
`ImmutableDefaultCifModel`	ImmutableDefaultCifModel.`withTitle(String value)`	Copy the current immutable object by setting a value for the `title` attribute.