Uses of Class
pl.poznan.put.pdb.analysis.ImmutableDefaultCifModel.Builder

Packages that use ImmutableDefaultCifModel.Builder

Package	Description
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.

Uses of ImmutableDefaultCifModel.Builder in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return ImmutableDefaultCifModel.Builder

Modifier and Type	Method	Description
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllAtoms(Iterable<? extends PdbAtomLine> elements)	Adds elements to atoms list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllBasePairs(Iterable<? extends QuantifiedBasePair> elements)	Adds elements to basePairs list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllChainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)	Adds elements to chainTerminatedAfter set.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllMissingResidues(Iterable<? extends PdbRemark465Line> elements)	Adds elements to missingResidues list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllModifiedResidues(Iterable<? extends PdbModresLine> elements)	Adds elements to modifiedResidues list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAtoms(PdbAtomLine element)	Adds one element to atoms list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAtoms(PdbAtomLine... elements)	Adds elements to atoms list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addBasePairs(QuantifiedBasePair element)	Adds one element to basePairs list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addBasePairs(QuantifiedBasePair... elements)	Adds elements to basePairs list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addChainTerminatedAfter(PdbResidueIdentifier element)	Adds one element to chainTerminatedAfter set.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addChainTerminatedAfter(PdbResidueIdentifier... elements)	Adds elements to chainTerminatedAfter set.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addMissingResidues(PdbRemark465Line element)	Adds one element to missingResidues list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addMissingResidues(PdbRemark465Line... elements)	Adds elements to missingResidues list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addModifiedResidues(PdbModresLine element)	Adds one element to modifiedResidues list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addModifiedResidues(PdbModresLine... elements)	Adds elements to modifiedResidues list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.atoms(Iterable<? extends PdbAtomLine> elements)	Sets or replaces all elements for atoms list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.basePairs(Iterable<? extends QuantifiedBasePair> elements)	Sets or replaces all elements for basePairs list.
static ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.builder()	Creates a builder for ImmutableDefaultCifModel.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.chainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)	Sets or replaces all elements for chainTerminatedAfter set.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.experimentalData(PdbExpdtaLine experimentalData)	Initializes the value for the experimentalData attribute.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.from(CifModel instance)	Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.CifModel instance.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.from(DefaultCifModel instance)	Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.DefaultCifModel instance.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.from(PdbModel instance)	Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.PdbModel instance.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.header(PdbHeaderLine header)	Initializes the value for the header attribute.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.missingResidues(Iterable<? extends PdbRemark465Line> elements)	Sets or replaces all elements for missingResidues list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.modelNumber(int modelNumber)	Initializes the value for the modelNumber attribute.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.modifiedResidues(Iterable<? extends PdbModresLine> elements)	Sets or replaces all elements for modifiedResidues list.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.resolution(PdbRemark2Line resolution)	Initializes the value for the resolution attribute.
ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.title(String title)	Initializes the value for the title attribute.