Package pl.poznan.put.pdb.analysis

Class PdbChain

java.lang.Object

pl.poznan.put.pdb.analysis.PdbChain

All Implemented Interfaces:

Serializable, Comparable<PdbChain>, ResidueCollection, SingleTypedResidueCollection

Direct Known Subclasses:

ImmutablePdbChain

@Immutable
public abstract class PdbChain
extends Object
implements Comparable<PdbChain>, SingleTypedResidueCollection

A chain in a structure.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
PdbChain()

Method Summary

Modifier and Type	Method	Description
int	compareTo(PdbChain t)
static PdbChain	fromBioJavaChain(org.biojava.nbio.structure.Chain chain)	Creates an instance of this class from a chain instance from BioJava.
abstract String	identifier()
abstract List<PdbResidue>	residues()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface pl.poznan.put.pdb.analysis.ResidueCollection

filteredAtoms, findBondLengthViolations, findResidue, hasResidue, indexOf, namedResidueIdentifiers, residueIdentifiers, sequence, toCif, toPdb, withoutAlternateLocations

Methods inherited from interface pl.poznan.put.pdb.analysis.SingleTypedResidueCollection

moleculeType

Constructor Detail

PdbChain

public PdbChain()

Method Detail

fromBioJavaChain

public static PdbChain fromBioJavaChain(org.biojava.nbio.structure.Chain chain)

Creates an instance of this class from a chain instance from BioJava.

Parameters:

chain - An instance of Chain from BioJava.

Returns:

An instance of this class with data converted from BioJava chain.

identifier

@Parameter(order=1)
public abstract String identifier()

Returns:

The chain identifier.

residues

@Parameter(order=2)
public abstract List<PdbResidue> residues()

Specified by:

residues in interface ResidueCollection

Returns:

The list of residues.

compareTo

public final int compareTo(@Nonnull
                           PdbChain t)

Specified by:

compareTo in interface Comparable<PdbChain>