java.lang.Object
- pl.poznan.put.pdb.analysis.ImmutableDefaultPdbModel.Builder

Enclosing class:

ImmutableDefaultPdbModel
```
@NotThreadSafe
public static final class ImmutableDefaultPdbModel.Builder
extends Object
```
Builds instances of type ImmutableDefaultPdbModel. Initialize attributes and then invoke the build() method to create an immutable instance.
Builder is not thread-safe and generally should not be stored in a field or collection, but instead used immediately to create instances.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`ImmutableDefaultPdbModel.Builder`	`addAllAtoms(Iterable<? extends PdbAtomLine> elements)`	Adds elements to `atoms` list.
`ImmutableDefaultPdbModel.Builder`	`addAllChainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)`	Adds elements to `chainTerminatedAfter` set.
`ImmutableDefaultPdbModel.Builder`	`addAllMissingResidues(Iterable<? extends PdbRemark465Line> elements)`	Adds elements to `missingResidues` list.
`ImmutableDefaultPdbModel.Builder`	`addAllModifiedResidues(Iterable<? extends PdbModresLine> elements)`	Adds elements to `modifiedResidues` list.
`ImmutableDefaultPdbModel.Builder`	`addAtoms(PdbAtomLine element)`	Adds one element to `atoms` list.
`ImmutableDefaultPdbModel.Builder`	`addAtoms(PdbAtomLine... elements)`	Adds elements to `atoms` list.
`ImmutableDefaultPdbModel.Builder`	`addChainTerminatedAfter(PdbResidueIdentifier element)`	Adds one element to `chainTerminatedAfter` set.
`ImmutableDefaultPdbModel.Builder`	`addChainTerminatedAfter(PdbResidueIdentifier... elements)`	Adds elements to `chainTerminatedAfter` set.
`ImmutableDefaultPdbModel.Builder`	`addMissingResidues(PdbRemark465Line element)`	Adds one element to `missingResidues` list.
`ImmutableDefaultPdbModel.Builder`	`addMissingResidues(PdbRemark465Line... elements)`	Adds elements to `missingResidues` list.
`ImmutableDefaultPdbModel.Builder`	`addModifiedResidues(PdbModresLine element)`	Adds one element to `modifiedResidues` list.
`ImmutableDefaultPdbModel.Builder`	`addModifiedResidues(PdbModresLine... elements)`	Adds elements to `modifiedResidues` list.
`ImmutableDefaultPdbModel.Builder`	`atoms(Iterable<? extends PdbAtomLine> elements)`	Sets or replaces all elements for `atoms` list.
`ImmutableDefaultPdbModel`	`build()`	Builds a new `ImmutableDefaultPdbModel`.
`ImmutableDefaultPdbModel.Builder`	`chainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)`	Sets or replaces all elements for `chainTerminatedAfter` set.
`ImmutableDefaultPdbModel.Builder`	`experimentalData(PdbExpdtaLine experimentalData)`	Initializes the value for the `experimentalData` attribute.
`ImmutableDefaultPdbModel.Builder`	`from(DefaultPdbModel instance)`	Fill a builder with attribute values from the provided `pl.poznan.put.pdb.analysis.DefaultPdbModel` instance.
`ImmutableDefaultPdbModel.Builder`	`from(PdbModel instance)`	Fill a builder with attribute values from the provided `pl.poznan.put.pdb.analysis.PdbModel` instance.
`ImmutableDefaultPdbModel.Builder`	`header(PdbHeaderLine header)`	Initializes the value for the `header` attribute.
`ImmutableDefaultPdbModel.Builder`	`missingResidues(Iterable<? extends PdbRemark465Line> elements)`	Sets or replaces all elements for `missingResidues` list.
`ImmutableDefaultPdbModel.Builder`	`modelNumber(int modelNumber)`	Initializes the value for the `modelNumber` attribute.
`ImmutableDefaultPdbModel.Builder`	`modifiedResidues(Iterable<? extends PdbModresLine> elements)`	Sets or replaces all elements for `modifiedResidues` list.
`ImmutableDefaultPdbModel.Builder`	`resolution(PdbRemark2Line resolution)`	Initializes the value for the `resolution` attribute.
`ImmutableDefaultPdbModel.Builder`	`title(String title)`	Initializes the value for the `title` attribute.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Method Detail
  - from
```
public final ImmutableDefaultPdbModel.Builder from(PdbModel instance)
```
    Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.PdbModel instance.
    
    Parameters:
    
    instance - The instance from which to copy values
    
    Returns:
    
    this builder for use in a chained invocation
  - from
```
public final ImmutableDefaultPdbModel.Builder from(DefaultPdbModel instance)
```
    Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.DefaultPdbModel instance.
    
    Parameters:
    
    instance - The instance from which to copy values
    
    Returns:
    
    this builder for use in a chained invocation
  - header
```
public final ImmutableDefaultPdbModel.Builder header(PdbHeaderLine header)
```
    Initializes the value for the header attribute.
    
    Parameters:
    
    header - The value for header
    
    Returns:
    
    this builder for use in a chained invocation
  - experimentalData
```
public final ImmutableDefaultPdbModel.Builder experimentalData(PdbExpdtaLine experimentalData)
```
    Initializes the value for the experimentalData attribute.
    
    Parameters:
    
    experimentalData - The value for experimentalData
    
    Returns:
    
    this builder for use in a chained invocation
  - resolution
```
public final ImmutableDefaultPdbModel.Builder resolution(PdbRemark2Line resolution)
```
    Initializes the value for the resolution attribute.
    
    Parameters:
    
    resolution - The value for resolution
    
    Returns:
    
    this builder for use in a chained invocation
  - modelNumber
```
public final ImmutableDefaultPdbModel.Builder modelNumber(int modelNumber)
```
    Initializes the value for the modelNumber attribute.
    
    Parameters:
    
    modelNumber - The value for modelNumber
    
    Returns:
    
    this builder for use in a chained invocation
  - addAtoms
```
public final ImmutableDefaultPdbModel.Builder addAtoms(PdbAtomLine element)
```
    Adds one element to atoms list.
    
    Parameters:
    
    element - A atoms element
    
    Returns:
    
    this builder for use in a chained invocation
  - addAtoms
```
public final ImmutableDefaultPdbModel.Builder addAtoms(PdbAtomLine... elements)
```
    Adds elements to atoms list.
    
    Parameters:
    
    elements - An array of atoms elements
    
    Returns:
    
    this builder for use in a chained invocation
  - atoms
```
public final ImmutableDefaultPdbModel.Builder atoms(Iterable<? extends PdbAtomLine> elements)
```
    Sets or replaces all elements for atoms list.
    
    Parameters:
    
    elements - An iterable of atoms elements
    
    Returns:
    
    this builder for use in a chained invocation
  - addAllAtoms
```
public final ImmutableDefaultPdbModel.Builder addAllAtoms(Iterable<? extends PdbAtomLine> elements)
```
    Adds elements to atoms list.
    
    Parameters:
    
    elements - An iterable of atoms elements
    
    Returns:
    
    this builder for use in a chained invocation
  - addModifiedResidues
```
public final ImmutableDefaultPdbModel.Builder addModifiedResidues(PdbModresLine element)
```
    Adds one element to modifiedResidues list.
    
    Parameters:
    
    element - A modifiedResidues element
    
    Returns:
    
    this builder for use in a chained invocation
  - addModifiedResidues
```
public final ImmutableDefaultPdbModel.Builder addModifiedResidues(PdbModresLine... elements)
```
    Adds elements to modifiedResidues list.
    
    Parameters:
    
    elements - An array of modifiedResidues elements
    
    Returns:
    
    this builder for use in a chained invocation
  - modifiedResidues
```
public final ImmutableDefaultPdbModel.Builder modifiedResidues(Iterable<? extends PdbModresLine> elements)
```
    Sets or replaces all elements for modifiedResidues list.
    
    Parameters:
    
    elements - An iterable of modifiedResidues elements
    
    Returns:
    
    this builder for use in a chained invocation
  - addAllModifiedResidues
```
public final ImmutableDefaultPdbModel.Builder addAllModifiedResidues(Iterable<? extends PdbModresLine> elements)
```
    Adds elements to modifiedResidues list.
    
    Parameters:
    
    elements - An iterable of modifiedResidues elements
    
    Returns:
    
    this builder for use in a chained invocation
  - addMissingResidues
```
public final ImmutableDefaultPdbModel.Builder addMissingResidues(PdbRemark465Line element)
```
    Adds one element to missingResidues list.
    
    Parameters:
    
    element - A missingResidues element
    
    Returns:
    
    this builder for use in a chained invocation
  - addMissingResidues
```
public final ImmutableDefaultPdbModel.Builder addMissingResidues(PdbRemark465Line... elements)
```
    Adds elements to missingResidues list.
    
    Parameters:
    
    elements - An array of missingResidues elements
    
    Returns:
    
    this builder for use in a chained invocation
  - missingResidues
```
public final ImmutableDefaultPdbModel.Builder missingResidues(Iterable<? extends PdbRemark465Line> elements)
```
    Sets or replaces all elements for missingResidues list.
    
    Parameters:
    
    elements - An iterable of missingResidues elements
    
    Returns:
    
    this builder for use in a chained invocation
  - addAllMissingResidues
```
public final ImmutableDefaultPdbModel.Builder addAllMissingResidues(Iterable<? extends PdbRemark465Line> elements)
```
    Adds elements to missingResidues list.
    
    Parameters:
    
    elements - An iterable of missingResidues elements
    
    Returns:
    
    this builder for use in a chained invocation
  - title
```
public final ImmutableDefaultPdbModel.Builder title(String title)
```
    Initializes the value for the title attribute.
    
    Parameters:
    
    title - The value for title
    
    Returns:
    
    this builder for use in a chained invocation
  - addChainTerminatedAfter
```
public final ImmutableDefaultPdbModel.Builder addChainTerminatedAfter(PdbResidueIdentifier element)
```
    Adds one element to chainTerminatedAfter set.
    
    Parameters:
    
    element - A chainTerminatedAfter element
    
    Returns:
    
    this builder for use in a chained invocation
  - addChainTerminatedAfter
```
public final ImmutableDefaultPdbModel.Builder addChainTerminatedAfter(PdbResidueIdentifier... elements)
```
    Adds elements to chainTerminatedAfter set.
    
    Parameters:
    
    elements - An array of chainTerminatedAfter elements
    
    Returns:
    
    this builder for use in a chained invocation
  - chainTerminatedAfter
```
public final ImmutableDefaultPdbModel.Builder chainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)
```
    Sets or replaces all elements for chainTerminatedAfter set.
    
    Parameters:
    
    elements - An iterable of chainTerminatedAfter elements
    
    Returns:
    
    this builder for use in a chained invocation
  - addAllChainTerminatedAfter
```
public final ImmutableDefaultPdbModel.Builder addAllChainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)
```
    Adds elements to chainTerminatedAfter set.
    
    Parameters:
    
    elements - An iterable of chainTerminatedAfter elements
    
    Returns:
    
    this builder for use in a chained invocation
  - build
```
public ImmutableDefaultPdbModel build()
```
    Builds a new ImmutableDefaultPdbModel.
    
    Returns:
    
    An immutable instance of DefaultPdbModel
    
    Throws:
    
    IllegalStateException - if any required attributes are missing

Class ImmutableDefaultPdbModel.Builder

Method Summary

Methods inherited from class java.lang.Object

Method Detail

from

from

header

experimentalData

resolution

modelNumber

addAtoms

addAtoms

atoms

addAllAtoms

addModifiedResidues

addModifiedResidues

modifiedResidues

addAllModifiedResidues

addMissingResidues

addMissingResidues

missingResidues

addAllMissingResidues

title

addChainTerminatedAfter

addChainTerminatedAfter

chainTerminatedAfter

addAllChainTerminatedAfter

build