Package pl.poznan.put.pdb.analysis

Class CifConverter

java.lang.Object

pl.poznan.put.pdb.analysis.CifConverter

public final class CifConverter
extends Object

A converter from mmCIF to one or more PDB files. It takes care of formats' mismatches (e.g. multi-character chain names in mmCIF vs single-character in PDB).

Method Summary

Modifier and Type	Method	Description
static ModelContainer	convert(File cifFile)	Parses a file in mmCIF format and convert it into a container of multiple PDB files.
static ModelContainer	convert(DefaultCifModel model)	Converts a parsed mmCIF model into a set of PDB files with mapped chain names.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

convert

public static ModelContainer convert(File cifFile)
                              throws IOException

Parses a file in mmCIF format and convert it into a container of multiple PDB files.

Parameters:

cifFile - Path to mmCIF file.

Returns:

A container of (possibly) multiple PDB files with mapped chain names.

Throws:

IOException - When reading of mmCIF file or writing to output files fails.

convert

public static ModelContainer convert(DefaultCifModel model)
                              throws IOException

Converts a parsed mmCIF model into a set of PDB files with mapped chain names.

Parameters:

model - A parse mmCIF model.

Returns:

A container of (possibly) multiple PDB files with mapped chain names.

Throws:

IOException - When writing to output files fails.